Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq442 143 3e-29 seq154 91.5 2e-13 seq162 84.2 3e-11 seq453 82.4 1e-10 >seq442 Length=162164 Score = 143 bits (158), Expect = 3e-29 Identities = 418/637 (66%), Gaps = 34/637 (5%) Strand=Plus/Minus Query 168492 ACTACCaaaaaaaTTGTATACACTAAC---ATTCTTAAAGAACTTTTATGGGTTATAAAA 168548 |||||||| ||| |||| | | || ||| || | ||| | |||||| |||| Sbjct 130212 ACTACCAAGAAA---GTATTCTCCAAAGGTATTATTCATGAATTATTATGGTTTATTGCT 130156 Query 168549 GGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGT 168608 || ||||| ||| | ||| ||||| | | || || ||| | ||| | | |||||| Sbjct 130155 GGATCAACCGATGCTAAAATATTAACCAACAAGGGAGTCAAAATATGGGAAGGTAATGGA 130096 Query 168609 TCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCA 168668 || ||||||| |||||| || || || || | | ||||||||||| || ||| Sbjct 130095 TCCCGTGAATATTTAGACAAATTGGGATTAACTCACCGTCGTGAAGGTGATTTGGGACCA 130036 Query 168669 ATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTAC 168728 | |||||||| |||||||||||| || ||| |||||| | |||||| | ||||| Sbjct 130035 GTATATGGATTCCAATGGAGACATTTTGGTGCTGAATATAAAAATTGTGATGCTGATTAT 129976 Query 168729 ACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACT---TTACACAACAATCCG 168785 || || ||||| || |||||| ||| ||||| || ||| | | || || Sbjct 129975 ACTGGGCAAGGTTATGATCAATTA---CAAGATATAATTAAAAAATTAAAGACTAACCCA 129919 Query 168786 GAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTT 168845 | ||||||||||| | || | | ||| | ||| | | || || |||| | | Sbjct 129918 TATGATAGAAGAATAATCATGAGTGCATGGAACCCTCCAGATTTCGACAAGATGGCTTTA 129859 Query 168846 CCCCCTTGTCACACTTTAGTGCAATTTTATGTAAGG-----AAAAAATC--AATCTTAGA 168898 || || ||||| ||| ||||||||||| | | | ||| || | || Sbjct 129858 CCTCCATGTCATGTTTTCTGTCAATTTTATGTTAACTTCCCAGAGAATGCTAAACCTAAG 129799 Query 168899 TTGTCA-----GTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATATT 168953 |||||| ||||||||||||||| |||| | ||||| || || |||| ||||||| Sbjct 129798 TTGTCATGTTTGTTGTATCAAAGATCTTGTGATATGGGATTGGGTGTTCCTTTTAATATT 129739 Query 168954 GGATTTTATTCATTTTTAAC--ACTTG--TGCT-AAGTAAATGGTGTAATTTGACGCCTG 169008 | | |||| |||| ||||| | || |||| | || || | | ||| || Sbjct 129738 GCCTCTTATGCATTATTAACCAAAATGATTGCTCATGTGGCTGATATGGATTG-----TG 129684 Query 169009 GAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTAA 169068 | ||||||| || ||| | || |||| || || || | | |||||||||| | |||| Sbjct 129683 GGGAGTTTATCCACACTATGGGTGATGCACATGTCTACTTAGACCATGTTGATGCATTAA 129624 Query 169069 AGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAA 169105 | | ||| | |||||| ||| | ||| ||||| Sbjct 129623 AAGAACAACTCGAAAGAATTCCAAAGAATTTCCCAAA 129587 >seq154 Length=15437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAG---A 193859 || || | ||||||||| | |||||||||||| ||||||||||||||| || | Sbjct 5713 GGTCCTATTTATTATCAAAAATTGAAACATATGGTTTTGGATAAAATGCATGCAAGAGCA 5654 Query 193860 AGTCATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGA 193919 || | | | || | | || ||| ||||||||| | ||| | || || ||| Sbjct 5653 AG--AGGTCCTAGAGCCGTTTTAACA-AGACAACCAACTGAAGGTAGATCAAGAGATGGT 5597 Query 193920 GGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTC 193979 ||||| ||||| || || ||||||| ||| ||| || | | | ||||| ||||||| Sbjct 5596 GGTTTGAGATTGGGGGAGATGGAGAGAGATTGTGTTATTGCATACGGTGCATCTCAATTG 5537 Query 193980 TTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGT 194039 ||| |||||| | | | | ||||||| | ||| | || |||||||| | ||||| Sbjct 5536 TTGTTGGAAAGATTAATGATTTCTTCTGATGCATTTGAGGTTGATGTTTGTAATAAATGT 5477 Query 194040 GG 194041 || Sbjct 5476 GG 5475 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193445 ACCTGAAATAGGGGATAAATTTTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 ||| ||| |||| |||||||||| ||| || | |||||||| |||||||| || Sbjct 6056 ACCGGAATTAGGTGATAAATTTTCTTCCAGACACGGACAAAAAGGTGTCTGTGGTATTAT 5997 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | | |||||||||||||||||| | | || ||||| |||||||||||||| || Sbjct 5996 TGTTCAACAAGAAGATATGCCATTCAATGATTATGGTATTTCTCCAGATATTATTATGAA 5937 Query 193565 TCCAAATTGTATTCCATCCAGAATGAC 193591 || || || | ||||| | ||||| Sbjct 5936 CCCCCATGGTTTCCCATCTCGTATGAC 5910 >seq162 Length=11089 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||| |||||||||||| ||| ||||| ||| | || | ||| | || |||||| Sbjct 1958 ATTAAAGTTGCTCAATTAGCTGGTTATGTAAGTGAAAACACCGGTTATCATCATGGTGAA 1899 Query 163058 CAAAATTTATGTGAA-ACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 163116 ||| |||| ||| | || || ||| || || ||| ||||||||||| | |||||||| Sbjct 1898 CAATCTTTA-GTGCAGACAATTATTGGATTGGCACAAAATTTTGTTGGTTCCAATAATAT 1840 Query 163117 AGCATTA-CTTGAA-CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCT 163174 || || ||||| || |||| ||||||| ||| | || |||||||||| Sbjct 1839 --CAATATTTTGAAGCCAAATGGGTCCTTTGGTAGTAGAGCTGCCGGTGGTAAAGATTTC 1782 Query 163175 GCGGCATCAAGATATATTTATAC 163197 | || | |||||||||| ||| Sbjct 1781 TCTGCTGCGAGATATATTTTTAC 1759 >seq453 Length=33062 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 51877 ATGATGTACT-ATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTA 51933 ||||||| | |||| ||| | |||||||| | ||||||||||||||| || || Sbjct 14514 ATGATGTTGTCATTATGAATCGTCAACCAACCTTGCATAAAGCTTCTATGATGGGTCATA 14455 Query 51934 AAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAAT-GAATTTGGCTATGACTAAAGCAT 51990 |||| | || ||||| | | || | ||||| || | ||| |||| || || | Sbjct 14454 AAGTGAGGGTTTTACCAGGTGAGAAGACTTTAAGATTGCATTATGCTAATACCGGTGCTT 14395 Query 51991 ATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 52037 ||||||| |||||||||||||||||||||||| | ||| | || ||| Sbjct 14394 ATAATGCCGATTTTGATGGGGATGAAATGAATATGCATTTCCCACAA 14348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173542803080