Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq442 136 5e-27 seq162 96.9 4e-15 seq453 82.4 1e-10 >seq442 Length=162164 Score = 136 bits (150), Expect = 5e-27 Identities = 305/458 (67%), Gaps = 14/458 (3%) Strand=Plus/Minus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 ||| | |||||| ||||| || ||||| ||| | ||| ||||| | | || || Sbjct 130176 GAATTATTATGGTTTATTGCTGGATCAACCGATGCTAAAATATTAACCAACAAGGGAGTC 130117 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 ||| | ||| | | |||||| || ||||||| |||||| || || || ||| | | Sbjct 130116 AAAATATGGGAAGGTAATGGATCCCGTGAATATTTAGACAAATTGGGATTAACTCACCGT 130057 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 171792 ||||||||||| || ||| | |||||||| |||||||||||| || ||| ||||| Sbjct 130056 CGTGAAGGTGATTTGGGACCAGTATATGGATTCCAATGGAGACATTTTGGTGCTGAATAT 129997 Query 171793 ATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAAT 171852 | | ||| || | ||||| || || ||||| || |||||| | | ||||| Sbjct 129996 AAAAATTGTGATGCTGATTATACTGGGCAAGGTTATGATCAATTACAAGATATAATTAAA 129937 Query 171853 ACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCAA 171912 | ||| | | |||||| | |||||| || | || | ||||| || | Sbjct 129936 AAATTAAAGACTAACCCATATGATAGAAGAATAATCATGAGTGCATGGAACCCTCCAGAT 129877 Query 171913 CTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGT--------CA 171964 | || || |||| | | ||||| || || ||| ||||||||||| || Sbjct 129876 TTCGACAAGATGGCTTTACCTCCATGTCATGTTTTCTGTCAATTTTATGTTAACTTCCCA 129817 Query 171965 GaaaaaaaTCAATCTTAGATTGTCA-----GTTATATCAAAGATCAGCTGATTTAGGATT 172019 || || | || || || |||||| ||| ||||||||||| |||| | ||||| Sbjct 129816 GAGAATGCTAAACCTAAG-TTGTCATGTTTGTTGTATCAAAGATCTTGTGATATGGGATT 129758 Query 172020 GGGGGTACCTTATAATATTGGATTTTATTCATTTTTAA 172057 ||| || |||| |||||||| | |||| |||| |||| Sbjct 129757 GGGTGTTCCTTTTAATATTGCCTCTTATGCATTATTAA 129720 >seq162 Length=11089 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 |||||||||||||||||| ||| ||||| ||| | || | |||| | ||||||||| Sbjct 1958 ATTAAAGTTGCTCAATTAGCTGGTTATGTAAGTGAAAACACCGGTTATCATCATGGTGAA 1899 Query 165220 CAAAATTTATGTGAA-ACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 ||| |||| ||| | || || ||| || || ||| ||||||||||| | |||||||| Sbjct 1898 CAATCTTTA-GTGCAGACAATTATTGGATTGGCACAAAATTTTGTTGGTTCCAATAATAT 1840 Query 165279 AGCATTA-CTTGAA-CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCT 165336 || || ||||| || |||| ||||||| ||| | || |||||||||| Sbjct 1839 --CAATATTTTGAAGCCAAATGGGTCCTTTGGTAGTAGAGCTGCCGGTGGTAAAGATTTC 1782 Query 165337 GCGGCATCAAGATATATTTATAC 165359 | || | |||||||||| ||| Sbjct 1781 TCTGCTGCGAGATATATTTTTAC 1759 >seq453 Length=33062 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 50327 ATGATGTACT-ATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTA 50383 ||||||| | |||| ||| | |||||||| | ||||||||||||||| || || Sbjct 14514 ATGATGTTGTCATTATGAATCGTCAACCAACCTTGCATAAAGCTTCTATGATGGGTCATA 14455 Query 50384 AAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAAT-GAATTTAGCTATGACTAAAGCAT 50440 |||| | || ||||| | | || | ||||| || | ||| |||| || || | Sbjct 14454 AAGTGAGGGTTTTACCAGGTGAGAAGACTTTAAGATTGCATTATGCTAATACCGGTGCTT 14395 Query 50441 ATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 ||||||| |||||||||||||||||||||||| | ||| | || ||| Sbjct 14394 ATAATGCCGATTTTGATGGGGATGAAATGAATATGCATTTCCCACAA 14348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628527185256960