Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq93 179 7e-40 seq100 172 1e-37 >seq93 Length=17569 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || ||| ||||| | || ||||| || || || || ||||||| Sbjct 17341 TACCACCTCTCAATCTCAAAACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAG 17400 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | ||||||||||||||| |||||| ||||| || || | |||||||||||| || | Sbjct 17401 ATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTG 17460 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || | ||| ||||| || || || ||| || ||| | Sbjct 17461 GAATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCAA 17520 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| || || || || || ||||| Sbjct 17521 CTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17569 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| | || ||||| || || || || |||||||| Sbjct 17114 ACCACCTCTCAATCTCAAGACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAGA 17173 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | ||||||||||||||| |||||| ||||| || || | |||||||||||| || || Sbjct 17174 TAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGG 17233 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| |||||||| || || | ||| ||||| || || || ||| || ||| || Sbjct 17234 AATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCAAC 17293 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||||| || || || || ||||| || || || || || ||||| Sbjct 17294 TTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17341 >seq100 Length=74788 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||||| |||||||| || || || || || || || Sbjct 22414 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGA 22473 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||||||||| | |||||| ||||||||||| | |||||||||||| || || Sbjct 22474 CAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGG 22533 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| |||||||||||||| | ||| ||||| || || || || | ||| || Sbjct 22534 AATACCTTCTTTATCTTGAATCTTAGATTTGACATTGTCGATGGTGTCGGAGGATTCGAC 22593 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || || || || || ||||| || || || ||||| Sbjct 22594 TTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 22641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820771793229