Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq93 125 6e-24 seq100 122 8e-23 seq510 104 2e-17 >seq93 Length=17569 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || ||||| ||| | || || | ||||| ||| | Sbjct 17341 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17282 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| ||||| |||||||| ||||| || || ||||| Sbjct 17281 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17222 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || |||||| | ||||| | ||||| | | |||||||| Sbjct 17221 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17162 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| ||| | || || || || ||||||||||| || Sbjct 17161 ATCCAAAAGGAATCAACCTTACACTTGGTCTTGAGATTGAGAGGTGG 17115 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || ||||| ||| | || || | ||||| ||| | Sbjct 17569 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17510 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| ||||| |||||||| ||||| || || ||||| Sbjct 17509 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17450 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || |||||| | ||||| | ||||| | | |||||||| Sbjct 17449 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17390 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| ||| | || || || || ||||||||||| || Sbjct 17389 ATCCAAAAGGAATCAACCTTACACTTGGTTTTGAGATTGAGAGGTGG 17343 >seq100 Length=74788 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || || ||||| || ||| | || || | ||||||||| || Sbjct 22644 AAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCC 22585 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| || ||||| | || ||| || ||| |||||||| ||||| || || ||| Sbjct 22584 TCCGACACCATCGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGTATTCCACCTGAT 22525 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || |||||| | || | | || |||||| | ||||| | ||||| | | ||| ||| Sbjct 22524 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTGTCCGACTAC 22465 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| ||||| ||| | || || || || ||||||||||| || Sbjct 22464 AACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 22415 >seq510 Length=157725 Score = 104 bits (114), Expect = 2e-17 Identities = 232/346 (67%), Gaps = 13/346 (4%) Strand=Plus/Minus Query 110051 TTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAAGGATTG 110110 ||||||||||| |||||||| || | | || ||||| | ||| || || || |||||| Sbjct 114861 TTTTCGAAAAAGTTAGTTTTACCGGCCAAGGAGATATTTTCCATGAAATCAAATGGATTG 114802 Query 110111 ACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCACAAATTCA 110170 | ||| | ||| | | ||||| | |||| |||| ||| || ||| ||||| Sbjct 114801 GTAACATTATAAACTTTCTTATTACCCAAAGCAAATAATAATCTATCAGCAACATATTCA 114742 Query 110171 ATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAACTGGTAGAGCGGTAGTa 110230 | ||| | ||||| | | ||||| ||||| | | |||||| ||||| |||| Sbjct 114741 ACATATTGACACATTAAATTAGAATTCATACCTAATAAAGAAACTGGAAGAGCATCAGTA 114682 Query 110231 aaaaaaTCCTTTTCAATGTCGACAGCCTCTACGA--ACATACTCAACACCTGGCTCTTAT 110288 ||| | || |||||||| || ||||| || || | | | |||||| || | Sbjct 114681 AAATATTCTTTTTCAATTTCAACAGCTTCAACAATGATTTTTTCAACA------ATTTCT 114628 Query 110289 GAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAGGCAAAATCAGTGTGTA 110348 | || | || ||| | ||| | ||| || | || ||||||||||| |||| Sbjct 114627 GGAGATGGTCTATTTTGTAAAT---GGGAGAATAATAAA--CAAGCAAAATCAGTATGTA 114573 Query 110349 ATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCGGG 110394 | |||||||||||| |||| | ||| ||| | | |||||||| || Sbjct 114572 AACCTTCATCTCTACAAATTAATTCATTGGAGAAAGTCAAACCTGG 114527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091556959520