Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq510 127 2e-24 seq100 87.8 2e-12 seq93 87.8 2e-12 >seq510 Length=157725 Score = 127 bits (140), Expect = 2e-24 Identities = 678/1070 (63%), Gaps = 41/1070 (4%) Strand=Plus/Minus Query 80695 TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATC 80754 ||||| | ||| | || |||| || | ||||| | || ||||| || | || || Sbjct 73346 TCGAATGGCAATCTCAATGTCATAAAGGCATCAGCTAAACCTTGAACACCCAATGCAATT 73287 Query 80755 GGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATG 80814 || | || | | |||| ||| || || || |||| |||||| ||||| || || Sbjct 73286 GGTCTATGTCTCATGTTAGATTTTTCAGCTTCTGGAACTGGGTAGTAGTTACGGTCAATA 73227 Query 80815 ACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT 80874 || | ||||| ||| || |||||||| ||||| ||||| | ||| | ||||| | | Sbjct 73226 ACTCTGTTCAAGTTACGAGTAACAACTTTAGTAACTTCATGTAATTTATCAAAGTTGTAC 73167 Query 80875 -------TGGTTCCCC----TTCA-CAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCA 80921 || || | |||| |||| || || || || | || |||| || || Sbjct 73166 CAAGTACTGTTTTCATCATTTTCAACAAAAGCAGGCAATGCA-ATAGAAGCCAAGTTACA 73108 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 || || || || || | | | | | | || || ||||| ||||| |||||||| || Sbjct 73107 AACAGCAACTTCATCTGGAGCAGAATATTCAACAATTTCACAACACAAGTTAGAAGATTT 73048 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || ||||| ||| || ||||| | ||||| ||| ||||| || || || ||||| | Sbjct 73047 GATAACACCCAAGTTCTTTTGGTTGGTCTTGGTGTTACAAGCATCTTTATATAACATGAA 72988 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 || |||||||| || || | | | |||||| | ||| | || | ||||||| Sbjct 72987 TGGAGTACCGGTTTCAGTTTGAGCACTCAAGATGGCATACCACAACTTTTGGGCCTTGAT 72928 Query 81102 CACCTTG-------CGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACT 81154 | ||| ||| || |||| || |||| || || ||||| | Sbjct 72927 -AGTTTGTCTACCACGGTTTTCTTTTTCG------TATTTGGTATATAACTCTTCGAATT 72875 Query 81155 TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA-TCAGGTGCCAGTCG 81213 |||| | | |||| | |||| ||||| || | | | |||| ||||||| Sbjct 72874 CATCACCATAGACATCAGACAAACCTGGAGCTTCGTTTGGAGAGAATAAGGT-CCAGTCG 72816 Query 81214 GTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCG 81273 | || | || || |||||| || || |||||||| | ||| | ||||| || Sbjct 72815 GCGTTTTGTTCAACTCTCTTCATAAACAAATCTGGGATCCATAAGGCTGGGAACAAATCT 72756 Query 81274 CGGCAGCGCGCCT--CCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGT 81331 | ||| | | | || | ||| ||||| | | || | || || | || | Sbjct 72755 CT--AGCTCTGATTTCTTCTTTACCGTGGTTCTTTCTAATATCAATGAAATCAAATATAT 72698 Query 81332 CCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCCACCCTGG 81387 | |||||||| |||| |||| ||| | | || ||| | ||||| ||| Sbjct 72697 CACTGTGCCATGGTTCCAAGTACAAGGCAAAAGCACCTGGTCTTTTGTTA-CCACCTTGG 72639 Query 81388 TTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGA 81447 | |||||||||||||| |||||| || | | |||||| |||||||||| || | Sbjct 72638 TCAACGTAACGGGCAGTGTTGTTAAAAACTCTGACCATAGGAATGATACCATTGGATGTA 72579 Query 81448 CCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT-TGAAAGACCGAT 81506 || || ||||| | || | || | | || | ||| || || || ||| || Sbjct 72578 CCATTAGTACCAGCAATGTATGCACCAGTAGAACGAATGTTGTGAATGTGCAA-ACCAAT 72520 Query 81507 GCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGAT 81566 ||||| | | ||| ||||| |||||| |||| || || ||||| || || || Sbjct 72519 ACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAAT 72460 Query 81567 GCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGC 81626 ||| | ||||| ||||||||||||| ||||| || || ||| | || || Sbjct 72459 AGAATCGTCCTTCATAGCAAGCAAGAAACATGAGGACATTTGTGGTCTTGGGGTACCTGC 72400 Query 81627 ATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTC 81686 ||||||| || | | || |||| || | | ||||||| || ||| ||||| Sbjct 72399 GTTGAACAAACAAGGAGAACCATGTGTGAAGTATCTTTGAGACATCAAGTTATATGTTTC 72340 Query 81687 CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 |||| | ||||||||| |||||||||||| ||||| || | ||||| Sbjct 72339 AATGACTCTTGGAATATCTCTACCGTGAATACCAATAGCAACTCTCATAA 72290 >seq100 Length=74788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || || || |||||||| | || || || || Sbjct 22641 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCCTCC 22582 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || |||| ||||| || || || || ||||| || || || Sbjct 22581 GACACCATCGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGTATTCCACCTGATCAA 22522 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||| ||| | || || | | | || | | ||||| || Sbjct 22521 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTGTCCGACTACAAC 22462 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| || | || | |||||| Sbjct 22461 ATCCAAAAGGAATCTACCTTGCACTTGGTCTTG 22429 >seq93 Length=17569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | ||||| || || |||||| | || ||||| || | Sbjct 17341 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17282 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | ||||| || || || || || ||||| || || || Sbjct 17281 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17222 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||| | || || | | | || || | || || || Sbjct 17221 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17162 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| || | || | |||||| Sbjct 17161 ATCCAAAAGGAATCAACCTTACACTTGGTCTTG 17129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | ||||| || || |||||| | || ||||| || | Sbjct 17569 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17510 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | ||||| || || || || || ||||| || || || Sbjct 17509 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17450 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||| | || || | | | || || | || || || Sbjct 17449 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17390 Query 27586 GTCCAAAAGGAATCCAC 27602 ||||||||||||| || Sbjct 17389 ATCCAAAAGGAATCAAC 17373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306757142320