Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq93 150 4e-31 seq100 143 6e-29 >seq93 Length=17569 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||| ||||||| |||||||| | |||||||| || Sbjct 17126 TCTCAAGACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAGATAAAGTTCTACC 17185 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || |||||||| || | || |||||| || || ||||||||||| || Sbjct 17186 GTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGAATACCTTCTTT 17245 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| || || ||| ||||| ||||| || | ||| || ||||| || || Sbjct 17246 ATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 17305 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||||||||| | ||| | |||||| Sbjct 17306 TGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17341 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | || ||||| ||||||| |||||||| | |||||||| || Sbjct 17354 TCTCAAAACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAGATAAAGTTCTACC 17413 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || |||||||| || | || |||||| || || ||||||||||| || Sbjct 17414 GTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGAATACCTTCTTT 17473 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| || || ||| ||||| ||||| || | ||| || ||||| || || Sbjct 17474 ATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAAT 17533 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||||||||| | ||| | |||||| Sbjct 17534 TGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17569 >seq100 Length=74788 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||| ||||||| ||||| |||| ||||||||| || Sbjct 22426 TCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 22485 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || ||||| ||||| | || |||||| || || ||||||||||| || Sbjct 22486 GTCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGAATACCTTCTTT 22545 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| ||||| || ||| ||||||||||| |||| ||| || || || || || Sbjct 22546 ATCTTGAATCTTAGATTTGACATTGTCGATGGTGTCGGAGGATTCGACTTCCAAGGTAAT 22605 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || || | ||| | |||||| || Sbjct 22606 AGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 22644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523392274634