Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 398 9e-106 seq5 233 2e-56 >seq4 Length=942658 Score = 398 bits (440), Expect = 9e-106 Identities = 1368/2127 (64%), Gaps = 29/2127 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||||| ||||| || | || || | | || ||||| || || || | Sbjct 334632 GTGAATTGAATGGCAGCGGCAGCAGCTTGAGTTCTCAAGTAATACATACCAGTCTTCAAT 334573 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCTGCTAT 52926 || ||||||| || |||||||| ||| ||||| || || ||| || Sbjct 334572 CCCTTCTTCCATCCATAGAAATGCATCGATGTCAGTTTACCCATGGTAGGGTTCTT-TAG 334514 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 || || |||||| |||| |||||| ||| |||| || ||||| |||||||| | || Sbjct 334513 GTGAATGTTCATACTTTGAGATTGATCAATGTAGGCACCTCTGTCGGCAGCCATATCGAT 334454 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 || | |||||| | |||||||||| || || || | ||| || |||| ||||| Sbjct 334453 AATAGACTTTTGCGAGATTTCCCAAACTGTCTTGTAGATATCCTTGATTTCTTGTGGAAT 334394 Query 53047 GTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||| | || ||||| || || || ||||| ||||| || ||| || Sbjct 334393 GTTAGGCAAGTTTTGAATCGACCCGTTGTCAGAAATAATGTGGTTCTTCATGGAATCGTT 334334 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||||||| | || || |||| | | | || ||||| | || || || || Sbjct 334333 CCATAATCCCATATCAACCAAGTCTCTCAACATGTAAGGGTTAACAATCTGGAACTCACC 334274 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 | || ||||| | | ||||||||| ||| || ||||| | | | ||||| | || Sbjct 334273 GGCTAAAACTCTTCTGGAATAAATATTAGAGGTGTATGGTTCAAAACATTCATTGTAACC 334214 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||||||||||| ||| || ||||| ||||| ||||| || |||||| ||||| | ||| Sbjct 334213 CAAAATTTGAGAAGTGGAGGCAGTTGGCATTGGTGCAACTAATAAAGAGTTTCTCAAACC 334154 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG--TACAACN 53341 | | || || || |||| ||||||| ||| | || | || | || Sbjct 334153 AAACTTGGAAATCTTTTCCTTTAATCCATCCCAATCCCATAAGTCGGTTGGCTTCTTACC 334094 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 53401 ||||| | ||| | ||| || || ||| | || || || ||| Sbjct 334093 CCACAAATCAAA--TTGTAATAAACCTTGACTTGCTGGAGAGCCTTCGTAGGTTTCATAT 334036 Query 53402 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 53461 || || || | || || ||| ||| || || |||| | ||| || || ||||| Sbjct 334035 GGACCGTCAACTTTGGCCAGCTCAATACTAGCTTCCAATGAAGCGTGGTATATAGTTTCA 333976 Query 53462 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT--ATCAAATGGATAATTTAAGAGAA 53519 || || | | ||||| ||| || | ||| ||||||||| | |||| | | Sbjct 333975 AAAATTTGTATGTTTAGTTCTCTAGCCTG--GGCAGAATCAAATGGCAATCTTAACATCA 333918 Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579 | || || || ||||| |||||||| |||| | | || ||||| | |||| | || || Sbjct 333917 TGAAGGCATCAGCTAAACCTTGAACCCCAACAGCAATTGGTCTGTTTCTCATGTTGGATC 333858 Query 53580 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAA 53639 || ||||||| || |||||||| || | || || || ||||| | || || ||| Sbjct 333857 TTCTAGCTTCTTCAACCGGATAATAGTTTCTGTCGATGATCTTATTCAAATTCTTGGCAA 333798 Query 53640 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---------TGTCCATCTATTA 53690 |||||| | || | | ||| ||| | | | | | |||| || Sbjct 333797 CAACTTTGGTTATTTCATGTAATTTCTCAAAGTTATACCACGATGAGTTTTCATCACTTT 333738 Query 53691 CAA-ACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||| | ||| | ||||||| ||||| | |||||||| || || || | | | Sbjct 333737 CAACAAATGCTGGTAATGCAACTGATGCTAAGTTACAAACAGCAACTTCTTCTGGGGAAG 333678 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 |||| | |||||| || |||||| | | ||||| | || || || ||||| | Sbjct 333677 AGTATTCAACAATCTCACAACACAGATTAGAAGATTTGATCATACCCAAGTTCTGTTGGT 333618 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | || |||| || |||||||||||||| |||||||| ||||| ||||| |||| | Sbjct 333617 TGGATTTCCTGTTGCATGCATCCTTATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTG 333558 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 53927 ||| | ||| | | ||| | ||||||| || | ||| | ||| |||| Sbjct 333557 CTTCCAAAATAGAGTACCATAATTTTTGAGCCTTGATGGTGGATCTACCTCTACCTTCTT 333498 Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987 |||| ||| | || ||| ||| || || || || |||||| ||| || || Sbjct 333497 TTTCATATTTTTCGTATAATTCTTCGAATTCATCACCATAAACATCACTCAAACCTGGGG 333438 Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047 |||| || | | | | ||| ||| | | | |||| ||||| || | || Sbjct 333437 CTTCACTTGGTGAAAAAAGAGTCCATTCTTGATTGTTTTCAACTCTCTTCATGAATAAAT 333378 Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 ||| |||||| | || || | |||||| | ||| ||| || || || || | Sbjct 333377 CAGAAATCCATAATGCAGGGAACAAATCTCTTGCTCTGATTTCTTCCTTACCATGGTTTT 333318 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 || ||| || | || | | |||||| | ||||| || || | |||| | | Sbjct 333317 TTCTAATGTCAATAAAGTCTAAAATATCTGCGTGCCATGGCTCGAGATATAAAGCAAAGG 333258 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 | ||||| | |||||| || || ||||| | ||||||||||| || ||| | ||||| | Sbjct 333257 CACCAGGTCTTTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTAAACACTCTAA 333198 Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287 ||||||||| ||||| ||||||| ||| ||||| || | ||||| || | | | Sbjct 333197 CCATTGGAATGATACCGTTGGATGTACCGTTGGTACCTGCAATATAAGAACCGGTCGATC 333138 Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347 |||||| ||| || ||| || || || || | || || || | || ||| ||| Sbjct 333137 TAATATTGTGAATGTGTAAACCAATACCACCAGCAGTCTTGGAAATCAGAGCACATTGTT 333078 Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 54407 |||| |||||||| || || || ||| |||||| ||| || || ||||| || Sbjct 333077 TTAAGGTATCATAAATACCTTCAATAGAATCATCTTGCATAGCAACTAAGAAACAAGAAG 333018 Query 54408 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467 ||||||| | | || || |||||||| || || |||||||| || ||||| || Sbjct 333017 ACATTTGATTTCTTGGGGTACCAGCATTAAACAAAGTTGGAGAAGCATGGGTAAAGTATC 332958 Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTA 54527 ||| ||| | |||||| || || || ||||| | |||||| |||||| || | Sbjct 332957 TTTTAGACATTAGATTATAGGTTTCAATAGCACTTTGTATATCATCACCATGAATACCAA 332898 Query 54528 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCA 54587 | || || | ||| | || |||||||||||||| | || | || | | ||| || Sbjct 332897 CAGCAACTCTCATAATCAAATGCTGAGGTCTTTCTGCAATTTGACCATTCAATCTCAACA 332838 Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 54645 | || ||| ||||||| ||||| ||||||||||||||||| ||||| |||| || || Sbjct 332837 AATAAGATCTTTCCAACGTTTTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCATA 332780 Query 54646 AATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA 54705 | |||| | || || ||| || ||| | || | ||| ||| | || Sbjct 332779 ATGAATAGCGTCGTCAAGAACATCAGCATTTTTTTGGACAATTTCCCAGGTGTCATCGGA 332720 Query 54706 AATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCAC 54765 ||| || ||||| ||||| || || || |||| |||||| || | || | | | ||| Sbjct 332719 AATCATTGGAGAGTGTTTACCGTTCTTTGGATCGACATATTTGTACAATTGGTCAACCAC 332660 Query 54766 TTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 54825 ||| ||| |||| | |||| ||| || | || || | || | ||| || || | Sbjct 332659 TTCGGAGAATTTTTTTGTGGTTTGTTTTTGCAAGTTAGAAATCGCCACTCTTGCTGCCAA 332600 Query 54826 AATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTC 54885 || || ||||| ||||| || || | ||||| |||| |||| | | || Sbjct 332599 AACTGCGTAATCTGGATGGATGGTGGTCATATATGCTGCAGTTTCTGCTGCTAAGTTATC 332540 Query 54886 CAATTCTACCGTTGTTACTCCATTATA 54912 ||| || ||||| | || |||| ||| Sbjct 332539 CAACTCCACCGTGGAAACACCATCATA 332513 >seq5 Length=831479 Score = 233 bits (258), Expect = 2e-56 Identities = 600/895 (67%), Gaps = 34/895 (4%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| || || | ||||| || || || || ||||| |||| || || ||| Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||||||||| | ||||| || || || || | ||| | | |||| ||||| | Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCT-CTTGTCACAACCAAG--AGAAA-C 305168 Query 23964 AA----TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA- 24018 || ||| || || ||||| || | |||| ||||| || ||||| || | Sbjct 305167 AAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAG 305108 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 |||||| |||||||||| | || | | || ||||||||| || || ||| | Sbjct 305107 TAAGTTGG-CTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGA 305049 Query 24079 TAATAGATCTTA--CTGTTTCTTC-ACTCGGTGG-ATACAATAAATGTTTAAACATCAAA 24134 | |||||| | |||| | || | || || ||||| || | ||| Sbjct 305048 T----GATCTTGAGCACGATCTTGGAATCTGGGGTATTGTTCAAATGGGAGAATAATAAA 304993 Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || |||||| ||||| ||| || ||||| | |||||||||||||||||| || | Sbjct 304992 CAAGCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAA 304933 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| | || | ||||| | ||| || ||||| ||||| ||||| || || || Sbjct 304932 CCTGGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAG 304873 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAACCGGCGCTGTCAT--- 24309 || ||||| || || |||||||||| | |||||| || |||| || | |||| Sbjct 304872 ATACCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAA--TGCATTTTCATCGC 304815 Query 24310 GTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 ||||| || || ||||| |||||||| | ||| | ||| || || | || || ||| Sbjct 304814 ACATCCATCTCATG-GCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCA 304756 Query 24369 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTAT 24426 || || | | | ||| || ||| || ||||| || ||||||| || || ||| Sbjct 304755 TTGAATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGTAT 304696 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||||||||| |||||||| || ||||| || || |||||||| | || || | Sbjct 304695 --GTTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAG 304638 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || || || | || ||| | |||||||| || || || || || | Sbjct 304637 GGATTTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAG 304578 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTAT 24603 | |||||||| ||||| || | || ||| || |||||| ||||| || | Sbjct 304577 CAGCAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTGT 304518 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||| || | | || ||||| | || | |||||| | ||||| || || || || | Sbjct 304517 TCCAGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGG 304458 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 ||||||| ||||| | |||||| ||||| |||| ||||| || | |||||||| Sbjct 304457 CCTTTTTGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGAGCACAAATCT 304403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721325403760