Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 129 6e-25 seq2 114 1e-20 >seq5 Length=831479 Score = 129 bits (142), Expect = 6e-25 Identities = 395/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Plus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 || ||| | ||||| || |||||| || || |||| ||||||||||||||||| ||| Sbjct 304406 TTTGTGCTCTTCCCAATCAAATACCATGAAATCTGGCAAATGTACAAAAAGGCCGAAGCG 304465 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG---GAGCGC 116722 || |||||||||| ||| || | ||| |||| |||||| ||||||| | | Sbjct 304466 TCTTTCTGGACCGCCGAAGAAATTGACTTGTCTAAGGACTTACACGACTGGAACAACAGA 304525 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 | || || ||||| | |||||| | ||| |||||||||| || || || Sbjct 304526 CTAAATGATAACGAAAGATTTTTCATTACCAGAGTGTTGGCCTTTTTTGCTGCTTCAGAT 304585 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 || || |||||||| ||| |||| || ||| | |||||||| | | || || Sbjct 304586 GGTATTGTCAACGAAAATTTGGTTGAAAACTTCTCGGCTGAGGTGCAAATCCCTGAAGCC 304645 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 ||| ||||| || || || ||| ||||| ||| | || ||||||| || || Sbjct 304646 AAGTGTTTCTATGGTTTCCAAATCATGATGGAAAACATCCATTCGGAAACATACTCCTTA 304705 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGA---GAAGCTCCGTTTGTTGAACGCCATC 116959 | || ||||| || || | | |||| | | || || || || ||||| Sbjct 304706 TTGATTGACACCTATGTCAAGGATCCAAAGGAATCGGAATTC---TTATTCAATGCCATT 304762 Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA 117019 || | || || || | ||||| |||||||| ||||| || | ||||| || | Sbjct 304763 GAAAACATTCCATGTATTAAAGAAAAGGCCGACTGGGCCATGAGATGGATGTGCGATGAA 304822 Query 117020 GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 | || ||||| || | | || ||||| || || || || || |||| || || Sbjct 304823 AATGCATTATTCGGTGAAAGATTAGTTGCCTTTGCCGCTGTTGAAGGTATCTTTTTCTCC 304882 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || || || |||| || ||| | || ||| | || | ||||| || |||| || Sbjct 304883 GGATCGTTTGCTTCCATTTTCTGGTTGAAAAAAAGAGGTTTGATGCCAGGTTTGACATTT 304942 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||| | || | ||| || || ||| | || ||| ||||| ||||| | ||| Sbjct 304943 TCCAACGAATTAATTTGCAGAGATGAAGGTTTACACACCGATTTTGCTTGTTTATTATTC 305002 Query 117200 AAGCATTTG 117208 |||||| Sbjct 305003 TCCCATTTG 305011 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || || || || | || || || |||||||| | || || ||| | Sbjct 265442 AAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCT 265501 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||| ||||| |||| || | || || || || ||||| | || Sbjct 265502 TCTGATACCATTGACAACG-TCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGA 265560 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||| || | |||| ||| || || || | || |||| | ||| | |||||| Sbjct 265561 CCAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTA 265620 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||||| |||| || || | |||||| | || || || || Sbjct 265621 CAACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGG 265671 >seq2 Length=1335671 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| || || || || ||||| ||| | || |||||| | Sbjct 4836 AAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATCT 4895 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| |||| || | ||||| || || || || | ||| Sbjct 4896 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 4955 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| || || || || |||| |||| | ||| | |||||| Sbjct 4956 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTAC 5015 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||| ||||| |||| || || |||| ||| | ||||| || || || Sbjct 5016 AACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGGTGG 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218961711120