Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 143 4e-29 seq6 111 2e-19 seq4 91.5 2e-13 >seq5 Length=831479 Score = 143 bits (158), Expect = 4e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||| || || || || ||| |||| ||||| | | Sbjct 265445 ATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 265504 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || || || |||||||| |||||||| |||||||| ||| Sbjct 265505 GATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGACCAA 265564 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || || || |||||||| || || |||| ||| || || || Sbjct 265565 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTACAAC 265624 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| ||||| ||| | || ||||| || | ||| |||||||||||| Sbjct 265625 ATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGGTATTA 265676 >seq6 Length=817167 Score = 111 bits (122), Expect = 2e-19 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 124617 AAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCA 124676 |||||||| ||||| || || |||||||| |||||||| ||||| || | || ||||| Sbjct 642979 AAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAGAGATTGATCTTTGCG 643038 Query 124677 GGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || || ||||||||||| | |||| | || || || |||||||||||||| || Sbjct 643039 GGTAAGCAATTAGAGGACGGAAGAACGCTMTCRGAYTACAACATTCAAAAAGAATCCACA 643098 Query 124737 TTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 | |||||||| || | || ||||||||| Sbjct 643099 CTCCATTTGGTGTTGAGATTGAGAGGTGGTA 643129 >seq4 Length=942658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 427/673 (63%), Gaps = 37/673 (5%) Strand=Plus/Minus Query 205317 TCtttttatttttaattttGGAAATGGGTTT---GGTGTACGTTCTAATTGtttttttAA 205373 ||| |||||| | || || |||||| ||| || || | ||||||||| | ||| || Sbjct 867865 TCTCTTTATTATCAACTTAGGAAAT---TTTCCAGGAGTTCTTTCTAATTGCTCTTTCAA 867809 Query 205374 TCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGG 205433 ||| || ||| || ||| | ||| |||| ||| || ||||| ||| | || Sbjct 867808 CGCATCAACATGGTTTGAATAGACATGAGCATCACCCATGACATGAACAAACTGGCCCGG 867749 Query 205434 TTTTAAATTAGTTAA-ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAA 205492 || | || | ||| || ||||| |||||||| || |||| || | ||| | Sbjct 867748 TTGCATATCCACCACCATG-GCGATCATGTAAGTCAACAAGGCATAAGATGCGATATTGA 867690 Query 205493 ATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATAT--TT 205550 | || || || | ||||||||| |||||||||||||||||||| | | | | || Sbjct 867689 ACGGCACTCCCAGGCCCATATCACACGATCTTTGATACATTTGACAATTCAAACGTGGTT 867630 Query 205551 ATTATTAA-------------------TTACATGAAATTGTACAAAACA-ATGACAAGGT 205590 || || | | |||| ||| || |||||||| ||| || || Sbjct 867629 TTTCTTCAGAGCCTTCTTTTGGAAAGTTGACATAAAACTG-ACAAAACACATGGCATGGA 867571 Query 205591 GGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA-GA 205649 || | |||| | || | | || || ||||| || | | || || |||| || Sbjct 867570 GGCAAGGCCATTTCTTTGAAAGCTGGCGGGTTCCAAGCAGAAAGAATGAT---TCTACGA 867514 Query 205650 T--TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTT 205707 | | || || |||| | | | ||||| | | | || ||||| || | Sbjct 867513 TCGTACGGATTTGTTTTAAGCGTGTGAATAATGTTGGCCAGCTGGTCAAACCCCTTTCCA 867454 Query 205708 GTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAA 205767 ||||||| || | ||| |||||| ||||||||||| | |||||| || ||||| Sbjct 867453 GTATAATCTGCGTGACAATCTTTATATTCGGCACCAAAATGTCTCCATTGGAAGCCATAC 867394 Query 205768 ACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaat 205827 || || || |||||||| ||| ||| | || | ||| | | | ||||| | Sbjct 867393 ACAGGCCCCAAATCACCCACTTCTCTGTGGTTGAGACCCAGAGAGTCCAGATATTCTCTG 867334 Query 205828 gatccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGAT 205887 ||||||||| | ||||| || || ||| || | || | || | | || || Sbjct 867333 GATCCATTTCCTTCCCAGATTCTGACTCCCTTTTCGGACAGCAGGTTGGCGTCCGTCGAA 867274 Query 205888 CCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTA 205947 ||| ||||||||||| || ||| | | ||| || || |||||| ||||||||| Sbjct 867273 CCATGTATAAACCATAGTAGTTCATGTAAAATACCCTTCAAAAACACCTTTTTTGTTGTC 867214 Query 205948 AATAATGGAAATG 205960 |||| |||||||| Sbjct 867213 AATARTGGAAATG 867201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455650601600