Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 250 2e-61 seq5 188 6e-43 seq2 96.9 3e-15 seq6 93.3 4e-14 >seq4 Length=942658 Score = 250 bits (276), Expect = 2e-61 Identities = 1161/1826 (64%), Gaps = 36/1826 (2%) Strand=Plus/Minus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 |||||||| || ||||||| ||| ||||||| | || ||||| ||||| |||| ||| Sbjct 334593 TAATACATACCAGTCTTCAATCCCTTCTTCCATCCATAGAAATGCATCGATGTCAGTTTA 334534 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | || | | || | || | ||| ||||| || | || ||| Sbjct 334533 CCCATGGTAGGGTTCTTTAGGTGAATGTTCATACTTTGAGATTGATCAATGTAGGCACCT 334474 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAG 22332 | ||||| ||||||| || ||| || | ||| |||||||| || |||||||| | Sbjct 334473 CTGTCGGCAGCCATATCGAT-AATAGACTTTTGCGAGATTTCCCAAACTGTCTTGTAGAT 334415 Query 22333 TTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGA 22391 | | |||| ||| || || | | | | | || | |||||||| | || | Sbjct 334414 ATCCTTGATTTCTTGTGGAAT-GTTAGGCAAGTTTTGAATCGACCCGTTGTCAGAAATAA 334356 Query 22392 TCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGAC 22451 | || || || | ||||||||| || || || | ||| ||| | | || | | Sbjct 334355 TGTGGTTCTTCATGGAATCGTTCCATAATCCCATATCAACCAAGTCTCTCAACATGTAAG 334296 Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGG--TAAATGTTGGATGTGAA 22509 |||| || | || ||||| |||| || || | | ||| ||||| || || ||| | Sbjct 334295 GGTTAACAATCTGGAACTCACCGGCTAAAACTCTTC--TGGAATAAATATTAGAGGTGTA 334238 Query 22510 CGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 ||||| ||| ||||||||| |||| || |||| || || || || ||||| || || Sbjct 334237 TGGTTCAAAACATTCATTGTAACCCAAAATTTGAGAAGTGGAGGCAGTTGGCATTGGTGC 334178 Query 22570 CAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCAG 22627 | | || ||||||||||| || ||| ||||| || ||| | |||| ||| Sbjct 334177 AACTAATAAAGAGTTTCTCAAACCAAACTTGGAAATCTTTTCCTTTAATCCATC--CCAA 334120 Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 ||||| | |||| ||| || || |||||| ||| |||| || | || |||| Sbjct 334119 TCCCATAAGTCGGTTGGCTTC---TTACCCCACAAATCAAATTGTAATAAACCTTGACTT 334063 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCC 22747 || || ||||||||| ||||| || ||||| | | ||| || || || || Sbjct 334062 GCTGGAGAGCCTTCGTAGGTTTCATATGGACCGTCAACTTTGGCCAGCTCAATACTAGCT 334003 Query 22748 TCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACG 22807 ||||| | ||| |||||||| || || |||| |||| | ||| || | | Sbjct 334002 TCCAATGAAGCGTGGTATATAGTTTCAAAAATTTGTATGTTTAGTTCTCTAGCCTGGGCA 333943 Query 22808 CTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCG 22867 || | |||| | | ||||| ||| || || || | ||| ||||| || | | | Sbjct 333942 GAATCAAATGGCAATCTTAACATCATGAAGGCATCAGCTAAACCTTGAACCCCAACAGCA 333883 Query 22868 ATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCG 22927 || |||| |||| ||| || || | | || || | ||||| | || ||| Sbjct 333882 ATTGGTCTGTTTCTCATGTTGGATCTTCTAGCTTCTTCAACCGGATAATAGTTTCTGTCG 333823 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || | | ||||| || ||| |||| ||| ||||| ||||||| Sbjct 333822 ATGATCTTATTCAAATTCTTGGCAACAACTTTGGTTATTTCATGTAATTTCTCAAAGT-- 333765 Query 22988 TAAACGCCCGAT---TGTACAACA-----AACT--TGTTG--ACGGCGATCGAGGCAAGA 23035 || || | |||| | | || || ||| || || | || | || || | Sbjct 333764 TATAC-CACGATGAGTTTTCATCACTTTCAACAAATGCTGGTAATGCAACTGATGCTAAG 333706 Query 23036 TTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTA 23095 || || || || || || ||| ||| | ||| || ||||| || ||| ||||| | Sbjct 333705 TTACAAACAGCAACTTCTTCTGGGGAAGAGTATTCAACAATCTCACAACACAGATTAGAA 333646 Query 23096 CACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGC 23155 | || ||| | ||||| || |||||| ||| | ||||| | |||||| || ||| Sbjct 333645 GATTTGATCATACCCAAGTTCTGTTGGTTGGATTTCCTGTTGCATGCATCCTTATAAAGC 333586 Query 23156 ATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCG 23215 ||| | || || || || || ||| | || | || | ||| | | ||||| Sbjct 333585 ATGAATGGTGTACCGGTTTCTGTCTGTGCTTCCAAAATAGAGTACCATAATTTTTGAGCC 333526 Query 23216 TGAACACGTCGCACGTACCTG--CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATT 23273 | | || | | ||||| ||||||| || || |||| ||| || | || |||| Sbjct 333525 TTGATG-GTGGATC-TACCTCTACCTTCTTTTTCATATTTTTCGTATAATTCTTCGAATT 333468 Query 23274 CGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACA-TT 23332 | |||| ||| || || || || | || | || | | ||| |||| || Sbjct 333467 CATCACCATAAACATCACTCAAACCTGGGGCTTCACTTGGTGAAAAAAGAGTCCATTCTT 333408 Query 23333 GAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCG 23392 || | |||||||| | |||| || | ||| | ||||||| || ||||| || Sbjct 333407 GATTG-TTTTCAACTCTCTTCATGAATAAATCAGAAATCCATAATGCAGGGAACAAATCT 333349 Query 23393 CGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCC 23452 | || | | || || || || ||| ||| | | || | |||||| || | || Sbjct 333348 CTTGCTCTGATTTCTTCCTTACCATGGTTTTTTCTAATGTCAATAAAGTCTAAAATATCT 333289 Query 23453 GCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCG 23512 || ||||| |||||||| || | ||||| || || ||||| || || || || |||||| Sbjct 333288 GCGTGCCATGGCTCGAGATATAAAGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCG 333229 Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 || || | || || ||||| ||||||| | ||| || | || ||||||||| | ||| Sbjct 333228 ACATATCTAGCGGTATTGTTAAACACTCTAACCATTGGAATGATACCGTTGGATGTACCG 333169 Query 23573 CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCT 23632 || || | | ||||| | | || || ||||||| ||| ||||| || || Sbjct 333168 TTGGTACCTGCAATATAAGAACCGGTCGATCTAATATTGTGAATGTGTAAACCAATACCA 333109 Query 23633 CCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTG 23692 || | | || || |||| || |||||||| | || || || || || || || Sbjct 333108 CCAGCAGTCTTGGAAATCAGAGCACATTGTTTTAAGGTATCATAAATACCTTCAATAGAA 333049 Query 23693 TCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAG 23752 || |||| | || || |||||||| ||||||||||| | | || ||| | || Sbjct 333048 TCATCTTGCATAGCAACTAAGAAACAAGAAGACATTTGATTTCTTGGGGTACCAGCATTA 332989 Query 23753 AACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATG 23812 |||| || || || || |||||||||| || ||||||||||| || || || || Sbjct 332988 AACAAAGTTGGAGAAGCATGGGTAAAGTATCTTTTAGACATTAGATTATAGGTTTCAATA 332929 Query 23813 GCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGT 23872 || | || || || || || ||||| | || || | ||| |||| | |||||| Sbjct 332928 GCACTTTGTATATCATCACCATGAATACCAACAGCAACTCTCATAATCAAATGCTGAGGT 332869 Query 23873 CTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCA 23932 || || | | || || | | | |||| ||| || | || || |||||| || ||| Sbjct 332868 CTTTCTGCAATTTGACCATTCAATCTCAACAAATAAGATCTTTCCAACGTTTTGAAACCA 332809 Query 23933 AAATAGTCATAGTTAAAGTCACGATC 23958 ||||||| ||||| || || | ||| Sbjct 332808 AAATAGTTGTAGTTGAAATCTCTATC 332783 >seq5 Length=831479 Score = 188 bits (208), Expect = 6e-43 Identities = 595/907 (66%), Gaps = 29/907 (3%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| | || || || |||| | || || ||| | |||||||||||||| ||| Sbjct 304403 AGATTTGTGCTCTTCCCAATCAAATACCATGAAATCTGGCAAATGTACAAAAAGGCCGAA 304462 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||||| ||||||| | ||| |||||||||| | ||| ||| | | Sbjct 304463 GCGTCTTTCTGGACCGCCGAAGAAATTGACTTGTCTAAGGACTTACACGACTGGAACAAC 304522 Query 57657 ---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 || || || || ||| ||| |||| |||||||| ||||| || || || Sbjct 304523 AGACTAAATGATAACGAAAGATTTTTCATTACCAGAGTGTTGGCCTTTTTTGCTGCTTCA 304582 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 ||||||||||| ||||| |||||||| |||| || || || |||||| | | || Sbjct 304583 GATGGTATTGTCAACGAAAATTTGGTTGAAAACTTCTCGGCTGAGGTGCAAATCCCTGAA 304642 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | || || || || || ||| | || |||||| | ||||| |||| || || Sbjct 304643 GCCAAGTGTTTCTATGGTTTCCAAATCATGATGGAAAACATCCATTCGGAAACATACTCC 304702 Query 57834 CTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTA--GACTGTTCAACGC 57889 || | || || || || || ||||| ||| | ||| || | | ||||| || Sbjct 304703 TTATTGATTGACACCTATGTCAAGGATCCAAAG----GAATCGGAATTCTTATTCAATGC 304758 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 || |||| || || || | ||||| || ||| | || | |||||| Sbjct 304759 CATTGAAAACATTCCATGTATTAAAGAAAAGGCCGACTGGGCCATGAGATGGATGTGCGA 304818 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | | || |||| || || || | || || ||||| || |||||||| || || Sbjct 304819 TGAAAATGCATTATTCGGTGAAAGATTAGTTGCCTTTGCCGCTGTTGAAGGTATCTTTTT 304878 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 || || ||||| | || || ||| |||| ||| | || ||||||| || |||| Sbjct 304879 CTCCGGATCGTTTGCTTCCATTTTCTGGTTGAAAAAAAGAGGTTTGATGCCAGGTTTGAC 304938 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAAT 58129 ||| |||||| || || | | || || ||| | || || |||||||| || || Sbjct 304939 ATTTTCCAACGAATTAATTTGCAGAGATGAAGGTTTACACACCGATTTTGCTTGTTTA-- 304996 Query 58130 GTACTCTCACATTGTCAATAAACCGACGCGGGATCGC---ATCTTGGACATTATCACC-- 58184 || |||| |||| | || || || | ||| | ||| || || |||| | Sbjct 304997 TTATTCTCCCATT-TGAACAA---TACCCCAGATTCCAAGATCGTGCTCAAGATCATCGA 305052 Query 58185 -GAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 || || || | || ||| || || | | |||| || || || || | | | || | Sbjct 305053 AGAAGCTGTTGAAATTGAACAAAGA-TATTTCACAGACGCTCTTCCAGCCAACTTACTTG 305111 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT-TTGCTC 58301 |||||||||| |||||||||| | || | || |||||||||||||||||| ||| | Sbjct 305112 GTATGAACAAAGATTTGATGTGTCAATATGTCGAATTTGTTGCCGACAGACTTCTTGTTT 305171 Query 58302 GAACTGATTG-GAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGAT 58360 || ||| || | | | |||||| | |||||| |||||||| ||| | || Sbjct 305172 CTCTTGGTTGTGACA-AGAGA-TACAACGTCACAAATCCTTTTGATTTCATGGAAAACAT 305229 Query 58361 CTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGG 58420 ||| | | || ||||| ||||| || ||||| | ||| ||| || ||||| ||| Sbjct 305230 CTCTTTAGCTGGTAAGACCAACTTCTTTGAAAAGAGAGTCTCCGATTACCAAAAGGCCGG 305289 Query 58421 CGTGATG 58427 || ||| Sbjct 305290 TGTCATG 305296 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || ||||| | || || || || ||||| | || |||||| | Sbjct 265442 AAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCT 265501 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | || | ||||| || | || || |||||||| | || || ||| Sbjct 265502 TCTGATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGAC 265561 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || |||||||| || || || |||||| || || | ||| || Sbjct 265562 CAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTAC 265621 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| |||||||| |||| | ||| | || || |||| Sbjct 265622 AACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGGTA 265673 >seq2 Length=1335671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || || || || || || || ||| | || || ||| | Sbjct 4836 AAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATCT 4895 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | || | ||||| || | || ||||||||||| | || || ||| Sbjct 4896 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 4955 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | |||| || ||||| || || ||||||||| || || | || || Sbjct 4956 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTAC 5015 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| || ||||| | || | ||| |||| || ||| Sbjct 5016 AACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGGT 5066 >seq6 Length=817167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| |||||| | || || || |||| Sbjct 642374 ATGCAGATCTTTGTCAAGACACTTACGGGTAAAACTATCACCCTAGAGGTGGAGTCGTCA 642433 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||||||| || |||||||||||| | || || ||||| Sbjct 642434 GACACCATTGACAATGTGAAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAA 642493 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| | | || || ||||| ||||||||||||||| Sbjct 642494 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGAC 642529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766193833040