Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 470 2e-127 seq5 246 4e-60 >seq4 Length=942658 Score = 470 bits (520), Expect = 2e-127 Identities = 1384/2126 (65%), Gaps = 27/2126 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||||| ||||| || | || || | | || ||||| || || || | Sbjct 334632 GTGAATTGAATGGCAGCGGCAGCAGCTTGAGTTCTCAAGTAATACATACCAGTCTTCAAT 334573 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164 || ||||||| || |||||||| || ||||| || || ||| || Sbjct 334572 CCCTTCTTCCATCCATAGAAATGCATCGATGTCAGTTTACCCATGGTAGGGTTCTT-TAG 334514 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 || || |||||| |||| |||||| ||| |||| || ||||| |||||||| | || Sbjct 334513 GTGAATGTTCATACTTTGAGATTGATCAATGTAGGCACCTCTGTCGGCAGCCATATCGAT 334454 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 || | |||||| | |||||||||| || || || | ||| || |||| ||||| Sbjct 334453 AATAGACTTTTGCGAGATTTCCCAAACTGTCTTGTAGATATCCTTGATTTCTTGTGGAAT 334394 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 ||| | || ||||| || || || ||||| ||||| || ||| || Sbjct 334393 GTTAGGCAAGTTTTGAATCGACCCGTTGTCAGAAATAATGTGGTTCTTCATGGAATCGTT 334334 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||||||| | || || |||| | | | |||||||| | ||||| || || Sbjct 334333 CCATAATCCCATATCAACCAAGTCTCTCAACATGTAAGGGTTAACAATCTGGAACTCACC 334274 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 | || ||||| | | ||||||||| ||| || ||||| | | ||||| | || Sbjct 334273 GGCTAAAACTCTTCTGGAATAAATATTAGAGGTGTATGGTTCAAAACATTCATTGTAACC 334214 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 ||||||||||| ||| || ||||| ||||| ||||| || |||||| ||||| | ||| Sbjct 334213 CAAAATTTGAGAAGTGGAGGCAGTTGGCATTGGTGCAACTAATAAAGAGTTTCTCAAACC 334154 Query 62522 GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANN 62581 | | || || || |||| ||||||| ||| | || | || | Sbjct 334153 AAACTTGGAAATCTTTTCCTTTAATCCATCCCAATCCCATAAGTCGGTTGGCTTCTTACC 334094 Query 62582 NNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGG 62641 | |||||| | ||| | ||| || || ||| | || || |||||||| Sbjct 334093 CCACAAATCAAATTGTAATAAACCTTGACTTGCTGGAGAGCCTTCGTAGGTTTCATATGG 334034 Query 62642 TCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAA 62701 || || | || || | | ||| || || |||| | ||| || || |||||||| Sbjct 334033 ACCGTCAACTTTGGCCAGCTCAATACTAGCTTCCAATGAAGCGTGGTATATAGTTTCAAA 333974 Query 62702 GATCTTCTTATTTAGATCTTGTGCTTCCGGGCT--ATCAAATGGATAATTTAAGAGAATA 62759 || | | ||||| ||| || | |||| ||||||||| | |||| | || Sbjct 333973 AATTTGTATGTTTAGTTCTCTAGCCT--GGGCAGAATCAAATGGCAATCTTAACATCATG 333916 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 || || || ||||| |||||||| |||| | | || ||||| | |||| | || || || Sbjct 333915 AAGGCATCAGCTAAACCTTGAACCCCAACAGCAATTGGTCTGTTTCTCATGTTGGATCTT 333856 Query 62820 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62879 ||||||| || |||||||| || | || || || ||||| | ||| || ||| Sbjct 333855 CTAGCTTCTTCAACCGGATAATAGTTTCTGTCGATGATCTTATTCAAATTCTTGGCAACA 333796 Query 62880 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---------CATCTATTACA 62930 |||||| | || | | ||| ||| | | | | | |||| || || Sbjct 333795 ACTTTGGTTATTTCATGTAATTTCTCAAAGTTATACCACGATGAGTTTTCATCACTTTCA 333736 Query 62931 A-ACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 | | ||| | |||||||| ||||| | ||||| || || || || | | | Sbjct 333735 ACAAATGCTGGTAATGCAACTGATGCTAAGTTACAAACAGCAACTTCTTCTGGGGAAGAG 333676 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | |||||| || |||||| | | ||||| | || || || ||||| || Sbjct 333675 TATTCAACAATCTCACAACACAGATTAGAAGATTTGATCATACCCAAGTTCTGTTGGTTG 333616 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || |||| || |||||||||||||| |||||||| ||||| ||||| |||| | | Sbjct 333615 GATTTCCTGTTGCATGCATCCTTATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTGCT 333556 Query 63108 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT 63167 || | ||| | | ||| | | ||||||| || | ||| | ||| | |||| || Sbjct 333555 TCCAAAATAGAGTACCATAATTTTTGAGCCTTGATGGTGGATCTACCTCTACCTTCTTTT 333496 Query 63168 TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG-TCCAATCTAGGACA 63226 || ||| || ||| |||||| || || || |||||| || || || || | Sbjct 333495 TCATATTTTTCGTATAATTCTTCGAATTCATCACCATAAACATCACTCAAACCTGGGGC- 333437 Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 |||| || | | | | ||| ||| | | | |||| ||||| || | ||| Sbjct 333436 TTCACTTGGTGAAAAAAGAGTCCATTCTTGATTGTTTTCAACTCTCTTCATGAATAAATC 333377 Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 || |||||| | || || | |||||||| ||| ||| || || || || || Sbjct 333376 AGAAATCCATAATGCAGGGAACAAATCTCTTGCTCTGATTTCTTCCTTACCATGGTTTTT 333317 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 | ||| || | || | | |||||| | ||||| || || | |||| || | | Sbjct 333316 TCTAATGTCAATAAAGTCTAAAATATCTGCGTGCCATGGCTCGAGATATAAAGCAAAGGC 333257 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 ||||| | |||||| || || ||||| | ||||||||||| || ||| | ||||| | Sbjct 333256 ACCAGGTCTTTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTAAACACTCTAAC 333197 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 ||||||||| |||||||| ||| |||| |||||||| | ||||| || | | | Sbjct 333196 CATTGGAATGATACCGTTGGATGTACCGTTGGTACCTGCAATATAAGAACCGGTCGATCT 333137 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 |||||| ||| || ||| || || || || | || || || | || ||| |||| Sbjct 333136 AATATTGTGAATGTGTAAACCAATACCACCAGCAGTCTTGGAAATCAGAGCACATTGTTT 333077 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 ||| || ||||| || ||||| || |||||| ||| || || ||||| ||| Sbjct 333076 TAAGGTATCATAAATACCTTCAATAGAATCATCTTGCATAGCAACTAAGAAACAAGAAGA 333017 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 |||||| | | | || || |||||||| || || |||||||| || ||||| || | Sbjct 333016 CATTTGATTTCTTGGGGTACCAGCATTAAACAAAGTTGGAGAAGCATGGGTAAAGTATCT 332957 Query 63707 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63766 || ||| | |||||| || || |||||||| | |||||| |||||| || || Sbjct 332956 TTTAGACATTAGATTATAGGTTTCAATAGCACTTTGTATATCATCACCATGAATACCAAC 332897 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 || || | ||| | || |||||||||||||| |||||| || | | ||||||| Sbjct 332896 AGCAACTCTCATAATCAAATGCTGAGGTCTTTCTGCAATTTGACCATTCAATCTCAACAA 332837 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAA 63884 || ||| ||||||| ||||| ||||||||||||||||| ||||| |||| || ||| Sbjct 332836 ATAAGATCTTTCCAACGTTTTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCATAA 332779 Query 63885 ATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAA 63944 |||| | | || ||| || ||| | || || ||| ||| | ||| Sbjct 332778 TGAATAGCGTCGTCAAGAACATCAGCATTTTTTTGGACAATTTCCCAGGTGTCATCGGAA 332719 Query 63945 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 64004 || || ||||| ||||| || || || |||| ||||| ||| | || | || | |||| Sbjct 332718 ATCATTGGAGAGTGTTTACCGTTCTTTGGATCGACATATTTGTACAATTGGTCAACCACT 332659 Query 64005 TCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGA 64064 || ||| |||| | |||| || || | || || || || | ||| || || | | Sbjct 332658 TCGGAGAATTTTTTTGTGGTTTGTTTTTGCAAGTTAGAAATCGCCACTCTTGCTGCCAAA 332599 Query 64065 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64124 | || ||||| ||||| || || | ||||| |||| ||||| | | ||| Sbjct 332598 ACTGCGTAATCTGGATGGATGGTGGTCATATATGCTGCAGTTTCTGCTGCTAAGTTATCC 332539 Query 64125 AATTCTACCGTTGTTACTCCATTATA 64150 || || ||||| | || |||| ||| Sbjct 332538 AACTCCACCGTGGAAACACCATCATA 332513 >seq5 Length=831479 Score = 246 bits (272), Expect = 4e-60 Identities = 597/891 (67%), Gaps = 26/891 (3%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || || | ||||| || || || || || || | || || || ||| Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||||||||| ||||| || || ||||| | || | | | || | ||||| | Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCTCTTGTCACAACCAAG---AGAAA-C 305168 Query 33411 AA----TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 || ||| || || || ||||| | |||| ||||| || ||||| || | Sbjct 305167 AAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAG 305108 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 | || |||||||||| | || | | || ||||||||| || || | | || Sbjct 305107 TAAGTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGAT 305048 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT-AAATGTTTAAACATCAAACATG 33585 || ||| | | | | || | || | | ||||| || | ||||| | Sbjct 305047 GATCTTGAGCACGATCT-TGGAATCTGGGGTATTGTTCAAATGGGAGAATAATAAACAAG 304989 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | |||||| ||| | ||| || ||||| | |||||||||||| ||||| || | || | Sbjct 304988 CAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCTG 304929 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| | || | ||||| | ||| || |||||||| || |||||||| || ||||| | Sbjct 304928 GCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAGATAC 304869 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTCAT---GTAT 33760 |||| || || |||||||||| | ||| || || |||| || | |||| || Sbjct 304868 CTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAA--TGCATTTTCATCGCACAT 304811 Query 33761 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||| || || ||||| |||||||| | ||| | ||| || || |||| |||||||| | Sbjct 304810 CCATCTCATG-GCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATTGA 304752 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACAT 33877 | | | | ||| || ||| || ||||| || || |||| || || ||| | Sbjct 304751 ATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGTAT--GT 304694 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||||||| |||||||| || || || || || |||||||| | || || | || Sbjct 304693 TTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAGGGAT 304634 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||||| || | | || ||| | |||||||| || || || ||||| || || Sbjct 304633 TTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAGCAGC 304574 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCA 34054 |||||| ||||| || | || ||| || |||||| ||||| || ||||| Sbjct 304573 AAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTGTTCCA 304514 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | | || ||||| | || | |||||| | ||||| || || || || ||||| Sbjct 304513 GTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGGCCTT 304454 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||| ||||| | |||||| ||||| |||| ||||||||| | |||||||| Sbjct 304453 TTTGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGAGCACAAATCT 304403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817308709360