Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 452 5e-122 seq5 246 4e-60 >seq4 Length=942658 Score = 452 bits (500), Expect = 5e-122 Identities = 1380/2127 (65%), Gaps = 29/2127 (1%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||||| ||||| || | || || | | || ||||| || || || | Sbjct 334632 GTGAATTGAATGGCAGCGGCAGCAGCTTGAGTTCTCAAGTAATACATACCAGTCTTCAAT 334573 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957 || ||||||| || |||||||| || ||||| || || ||| || Sbjct 334572 CCCTTCTTCCATCCATAGAAATGCATCGATGTCAGTTTACCCATGGTAGGGTTCTT-TAG 334514 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 || || |||||| |||| |||||| ||| |||| || ||||| |||||||| | || Sbjct 334513 GTGAATGTTCATACTTTGAGATTGATCAATGTAGGCACCTCTGTCGGCAGCCATATCGAT 334454 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 || | |||||| | |||||||||| || || || | ||| || |||| ||||| Sbjct 334453 AATAGACTTTTGCGAGATTTCCCAAACTGTCTTGTAGATATCCTTGATTTCTTGTGGAAT 334394 Query 65078 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||| | || ||||| || || || | ||||| ||||| || ||| || Sbjct 334393 GTTAGGCAAGTTTTGAATCGACCCGTTGTCAGAAATAATGTGGTTCTTCATGGAATCGTT 334334 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||||||| | || || |||| | | | || ||||| | || || || || Sbjct 334333 CCATAATCCCATATCAACCAAGTCTCTCAACATGTAAGGGTTAACAATCTGGAACTCACC 334274 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 | || ||||| | | ||||||||| ||| || ||||| | | | ||||| | || Sbjct 334273 GGCTAAAACTCTTCTGGAATAAATATTAGAGGTGTATGGTTCAAAACATTCATTGTAACC 334214 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 ||||||||||| ||| || ||||| ||||| ||||| || |||||| ||||| | ||| Sbjct 334213 CAAAATTTGAGAAGTGGAGGCAGTTGGCATTGGTGCAACTAATAAAGAGTTTCTCAAACC 334154 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG--TACAACN 65372 | | || || || |||| ||||||| ||| | || | || | || Sbjct 334153 AAACTTGGAAATCTTTTCCTTTAATCCATCCCAATCCCATAAGTCGGTTGGCTTCTTACC 334094 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 65432 ||||| | ||| | ||| || || ||| | || || || ||| Sbjct 334093 CCACAAATCAAA--TTGTAATAAACCTTGACTTGCTGGAGAGCCTTCGTAGGTTTCATAT 334036 Query 65433 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 65492 || || || | || || ||| ||| || || |||| | ||| || || ||||| Sbjct 334035 GGACCGTCAACTTTGGCCAGCTCAATACTAGCTTCCAATGAAGCGTGGTATATAGTTTCA 333976 Query 65493 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT--ATCAAATGGATAATTTAAGAGAA 65550 || || | | ||||| ||| || | ||| ||||||||| | |||| | | Sbjct 333975 AAAATTTGTATGTTTAGTTCTCTAGCCTG--GGCAGAATCAAATGGCAATCTTAACATCA 333918 Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610 | || || || ||||| |||||||| |||| | | || ||||| | |||| | || || Sbjct 333917 TGAAGGCATCAGCTAAACCTTGAACCCCAACAGCAATTGGTCTGTTTCTCATGTTGGATC 333858 Query 65611 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670 || ||||||| || |||||||| || | || || || ||||| | ||| || ||| Sbjct 333857 TTCTAGCTTCTTCAACCGGATAATAGTTTCTGTCGATGATCTTATTCAAATTCTTGGCAA 333798 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC---------TCATCTATTA 65721 |||||| | || | | ||| ||| | | | | | ||||| || Sbjct 333797 CAACTTTGGTTATTTCATGTAATTTCTCAAAGTTATACCACGATGAGTTTTCATCACTTT 333738 Query 65722 CAA-ACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 ||| | ||| | |||||||| ||||| | |||||||| || || || | | | Sbjct 333737 CAACAAATGCTGGTAATGCAACTGATGCTAAGTTACAAACAGCAACTTCTTCTGGGGAAG 333678 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 |||| | |||||| || |||||| | | ||||| | || || || ||||| | Sbjct 333677 AGTATTCAACAATCTCACAACACAGATTAGAAGATTTGATCATACCCAAGTTCTGTTGGT 333618 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | || |||| || |||||||||||||| |||||||| ||||| ||||| |||| | Sbjct 333617 TGGATTTCCTGTTGCATGCATCCTTATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTG 333558 Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 65958 ||| | ||| | | ||| | | ||||||| || | ||| | ||| |||| Sbjct 333557 CTTCCAAAATAGAGTACCATAATTTTTGAGCCTTGATGGTGGATCTACCTCTACCTTCTT 333498 Query 65959 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 66018 |||| ||| | || ||| |||||| || || || |||||| ||| || || Sbjct 333497 TTTCATATTTTTCGTATAATTCTTCGAATTCATCACCATAAACATCACTCAAACCTGGGG 333438 Query 66019 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 66078 |||| || | | | | ||| ||| | | | |||| ||||| || | || Sbjct 333437 CTTCACTTGGTGAAAAAAGAGTCCATTCTTGATTGTTTTCAACTCTCTTCATGAATAAAT 333378 Query 66079 CAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138 ||| |||||| | || || |||||||| | ||| ||| || || || || | Sbjct 333377 CAGAAATCCATAATGCAGGGAACAAATCTCTTGCTCTGATTTCTTCCTTACCATGGTTTT 333318 Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198 || ||| || | || | | |||||| ||||| || || | |||| || | Sbjct 333317 TTCTAATGTCAATAAAGTCTAAAATATCTGCGTGCCATGGCTCGAGATATAAAGCAAAGG 333258 Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258 | ||||| | |||||| || || ||||| | ||||||||||| || ||| | ||||| | Sbjct 333257 CACCAGGTCTTTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTAAACACTCTAA 333198 Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318 ||||||||| ||||| ||||||||||| ||||| || | ||||| || | | | Sbjct 333197 CCATTGGAATGATACCGTTGGATGTACCGTTGGTACCTGCAATATAAGAACCGGTCGATC 333138 Query 66319 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378 |||||| ||| || ||| || || || || | || || || | || ||| ||| Sbjct 333137 TAATATTGTGAATGTGTAAACCAATACCACCAGCAGTCTTGGAAATCAGAGCACATTGTT 333078 Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438 |||| |||||||| || || || ||| |||||| ||| || || ||||| || Sbjct 333077 TTAAGGTATCATAAATACCTTCAATAGAATCATCTTGCATAGCAACTAAGAAACAAGAAG 333018 Query 66439 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498 ||||||| | | || || |||||||| || || |||||||| || ||||| || Sbjct 333017 ACATTTGATTTCTTGGGGTACCAGCATTAAACAAAGTTGGAGAAGCATGGGTAAAGTATC 332958 Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 66558 ||| ||| | |||||| || || |||||||| | |||||| |||||| || | Sbjct 332957 TTTTAGACATTAGATTATAGGTTTCAATAGCACTTTGTATATCATCACCATGAATACCAA 332898 Query 66559 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 66618 | || || | ||| | || |||||||||||||| | || | || | | |||||| Sbjct 332897 CAGCAACTCTCATAATCAAATGCTGAGGTCTTTCTGCAATTTGACCATTCAATCTCAACA 332838 Query 66619 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 66676 | || ||| ||||||| ||||| ||||||||||||||||| ||||| |||| || || Sbjct 332837 AATAAGATCTTTCCAACGTTTTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCATA 332780 Query 66677 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA 66736 | |||| | || || ||| || ||| | || | ||| ||| | || Sbjct 332779 ATGAATAGCGTCGTCAAGAACATCAGCATTTTTTTGGACAATTTCCCAGGTGTCATCGGA 332720 Query 66737 AATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCAC 66796 ||| || ||||| ||||| || || || |||| |||||| ||| | || | || | ||| Sbjct 332719 AATCATTGGAGAGTGTTTACCGTTCTTTGGATCGACATATTTGTACAATTGGTCAACCAC 332660 Query 66797 TTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAT 66856 ||| ||| |||| | |||| ||| || | || || | || | ||| || || | Sbjct 332659 TTCGGAGAATTTTTTTGTGGTTTGTTTTTGCAAGTTAGAAATCGCCACTCTTGCTGCCAA 332600 Query 66857 AATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 66916 || || ||||| ||||| || || | ||||| |||| ||||| | | || Sbjct 332599 AACTGCGTAATCTGGATGGATGGTGGTCATATATGCTGCAGTTTCTGCTGCTAAGTTATC 332540 Query 66917 CAATTCTACCGTTGTTACTCCATTATA 66943 ||| || ||||| | || |||| ||| Sbjct 332539 CAACTCCACCGTGGAAACACCATCATA 332513 >seq5 Length=831479 Score = 246 bits (272), Expect = 4e-60 Identities = 599/892 (67%), Gaps = 28/892 (3%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| || || | ||||| || || || || ||||| |||| || || ||| Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||||||||| || ||||| | || || || | || | | | || | ||||| | Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCTCTTGTCACAACCAAG---AGAAA-C 305168 Query 35987 AA----TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA- 36041 || ||| || || |||||||| | |||| ||||| || ||||| || | Sbjct 305167 AAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAG 305108 Query 36042 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 36101 |||||| |||||||||| | || | | || ||||||||| || || ||| | Sbjct 305107 TAAGTTGG-CTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGA 305049 Query 36102 TAATAGATATTACTGTTTCTTCACTCGGTGG-ATACAATAAATGTTTAAACATCAAACAT 36160 | || | || | | | | || | || || ||||| || | ||||| Sbjct 305048 TGATCTTGAGCACGATCT-TGGAATCTGGGGTATTGTTCAAATGGGAGAATAATAAACAA 304990 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || |||||| ||||| ||| || ||||| | |||||||||||||||||| || | || Sbjct 304989 GCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCT 304930 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||| | || | ||||| | ||| || ||||| ||||| ||||| || || || || Sbjct 304929 GGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAGATA 304870 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACTGTCAT---GTA 36335 ||||| || || |||||||||| | ||| || || |||| ||| | |||| | Sbjct 304869 CCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAA--TGCATTTTCATCGCACA 304812 Query 36336 TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||| || || ||||| |||||||| | ||| | ||| || || | || || ||||| Sbjct 304811 TCCATCTCATG-GCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATTG 304753 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACA 36452 || | | | ||| || ||| || ||||| || ||||||| || || ||| Sbjct 304752 AATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGTAT--G 304695 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||||||||| |||||||| || ||||| || || |||||||| | || || | | Sbjct 304694 TTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAGGGA 304635 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 | || || || | | || ||| | |||||||| || || || || || || | Sbjct 304634 TTTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAGCAG 304575 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT---TTATTCC 36629 ||||||| ||||| || | || ||| || ||||||| ||||| || |||| Sbjct 304574 CAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTGTTCC 304515 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | || | | || ||||| | || | |||||| | ||||| || || || || |||| Sbjct 304514 AGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGGCCT 304455 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 |||| ||||| | |||||| ||||| |||| ||||| || | |||||||| Sbjct 304454 TTTTGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGAGCACAAATCT 304403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172495595080