Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 233 2e-56 >seq5 Length=831479 Score = 233 bits (258), Expect = 2e-56 Identities = 500/733 (68%), Gaps = 28/733 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||| ||||| |||||||| ||||| || || || |||| || || ||| Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---ACACCCTAATTCTAGT 12976 ||||| ||||| ||||||||| | || | |||| | || ||| || | || Sbjct 305223 TCCATGAAATCAAAAGGATTTGTG--ACGTT-GTATCTCTTGTCACAACCAAG----AGA 305171 Query 12977 AACAA----TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCC 13032 ||||| |||||| |||||||| || | || || ||| ||||| |||||| || Sbjct 305170 AACAAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACC 305111 Query 13033 TATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT 13092 | ||| || | || | ||| ||||| ||| | ||| ||| || ||||| ||||| Sbjct 305110 AAGTAAGTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTT- 305052 Query 13093 AACTATGTCTCTT-ATTACGTTCTCTAA---TGGAGGATTTGATAGATGCTTAAACATCA 13148 | ||| |||| | ||| ||| | ||| | ||| | ||| || | | Sbjct 305051 --CGATGA-TCTTGAGCACGATCTTGGAATCTGGGGTATTGTTCAAATGGGAGAATAATA 304995 Query 13149 TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTA 13208 ||| |||||||| ||| || ||||||||||| | |||| ||||| |||||||| | Sbjct 304994 AACAAGCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCA 304935 Query 13209 GACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaa 13268 ||| ||||| | |||| |||||| | ||| || || | ||||||||| || || |||| Sbjct 304934 AACCTGGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAA 304875 Query 13269 aTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC--ATACGTACTATTTTTACT 13326 | || |||||||| || ||||| || | || |||||||| ||| | | ||||| | | Sbjct 304874 AGATACCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATA-ATGC-ATTTTCA-T 304818 Query 13327 CTC-TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 | | ||||| | ||||||||| || |||| ||||| || || ||||| || | Sbjct 304817 CGCACATCCATCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGG 304758 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | || ||||| | | |||||| || | ||| || || ||||||||| | Sbjct 304757 CATTGAATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGT 304698 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 | |||| ||||| || ||||||||| |||||||||||||| ||||| | || || | Sbjct 304697 ATGTTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAG 304638 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | || || || | | || |||| | || |||||||| || || || || || Sbjct 304637 GGATTTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAG 304578 Query 13566 CAGCaaaaaaaGC 13578 |||||||||| || Sbjct 304577 CAGCAAAAAAGGC 304565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982205653874