Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 244 2e-59 seq2 154 3e-32 seq6 136 9e-27 >seq5 Length=831479 Score = 244 bits (270), Expect = 2e-59 Identities = 589/871 (68%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||||||| | || ||||| | | ||| || ||| ||||||||| |||||| Sbjct 304403 AGATTTGTGCTCTTCCCAATCAAATACCATGAAATCTGGCAAATGTACAAAAAGGCCGAA 304462 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 || ||||| ||||| | |||||| | || ||||| | |||||| || ||||| || Sbjct 304463 GCGTCTTTCTGGACCGCCGAAGAAATTGACTTGTCTAAGGACTTACACGACTGGAACAAC 304522 Query 268820 TTA--AAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875 | ||| | || |||||| || || | | | | ||| | |||||||| | | Sbjct 304523 AGACTAAATGATAACGAAAGATTTTTCATTACC-AGAGTGTTGGCCTTTTTTGCTGCTTC 304581 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 |||||||| || ||||||||| | || || || |||| ||||| || || ||||| Sbjct 304582 AGATGGTATTGTCAACGAAAATTTGGTTGAAAACTTCTCGGCTGAGGTGCAAATCCCTGA 304641 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| ||||| || || ||||| || || ||||| || ||||| || | ||| Sbjct 304642 AGCCAAGTGTTTCTATGGTTTCCAAATCATGATGGAAAACATCCATTCGGAAACATACTC 304701 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT 269055 |||| || || || ||| | | ||| || ||| | || |||| | | || Sbjct 304702 CTTATTGATTGACACCTATGTCAAGGATCCAAAGGAATCGGAATTCTTATTCAATGCCAT 304761 Query 269056 -GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT- 269113 || ||| | | ||| | | | |||| | || ||||| ||| |||||| |||| Sbjct 304762 TGAAAACATTCCA-TGTATTAAAGAAAAGGCCGACTGGGCCATGAGATGGATGTGCGATG 304820 Query 269114 AGCGCGCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | || ||| ||| ||||| |||||||| ||||||||||| |||||||| || || | Sbjct 304821 AAAATGCATTATTCGGTGAAAGATTAGTTGCCTTTGCCGCTGTTGAAGGTATCTTTTTCT 304880 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || || ||||| | || || |||||||| |||||||| | |||||||| || || | Sbjct 304881 CCGGATCGTTTGCTTCCATTTTCTGGTTGAAAAAAAGAGGTTTGATGCCAGGTTTGACAT 304940 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTAT 269291 | || |||||||| || |||| || |||||||||||| ||| || ||||||||||||| Sbjct 304941 TTTCCAACGAATTAATTTGCAGAGATGAAGGTTTACACACCGATTTTGCTTGTTTATTAT 305000 Query 269292 TTACTAATT--ATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTC 269349 | | ||| | | | | || | ||| |||||| || | | || || || Sbjct 305001 TCTCCCATTTGAACAATACCCCAGA--TTC-CAAGAT--CGTGCTCAAGATCATCGAAGA 305055 Query 269350 AGCTGTTTCTGTAGAA-ACAGA-ATTTCTAACGGAAGCTCTATCTATCGATCTTA-TCGG 269406 ||||||| | ||| | ||| ||||| || || ||||| || | | | |||| | || Sbjct 305056 AGCTGTTGAAATTGAACAAAGATATTTC--ACAGACGCTCT-TCCAGCCAACTTACTTGG 305112 Query 269407 TATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTC 269466 |||||| | | | |||| ||||| | | || || | || ||| | || || || Sbjct 305113 TATGAACAAAGATTTGATGTGTCAATATGTCGAATTTGTTGCCGACAGACTTCTTGTTTC 305172 Query 269467 TTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATC 269526 | | || | | || | ||| ||||| |||||| ||| ||| ||||| || || || Sbjct 305173 TCTTGGTTGTGACAAGAGATACAACGTCACAAATCCTTTTGATTTCATGGAAAACATCTC 305232 Query 269527 ATTAGAAGGTAAGGCTAATTTCTTCGAGAAG 269557 |||| |||||| | || ||||| || ||| Sbjct 305233 TTTAGCTGGTAAGACCAACTTCTTTGAAAAG 305263 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | || | || ||||| || || || || ||||| Sbjct 265674 ATACCACCTCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 265615 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||||||||||||| ||| || ||||| || || | || ||||| ||||| Sbjct 265614 GATAAGGTTCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGT 265555 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || |||||| || || || || | |||||| || ||| Sbjct 265554 GGGATACCTTCCTTATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCA 265495 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || ||||||||||| | || || ||||| || ||||| ||| Sbjct 265494 ACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTTG 265441 >seq2 Length=1335671 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||||| |||||||||||||| | ||| || ||| Sbjct 5035 GTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACCGTCTTCCAATTGCTTACCA 4976 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| || ||||| ||||| || || ||||| || || || |||||| || Sbjct 4975 GCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTTTGCTTG 4916 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || || ||||| |||||||| ||||| ||| Sbjct 4915 ACATTGTCAATGGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTACCGGTAAGGGTT 4856 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 4855 TTAACGAAAATTTGCATTTT 4836 >seq6 Length=817167 Score = 136 bits (150), Expect = 9e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || ||||| ||||| |||||||| | ||||| |||||||| || | |||||||| ||| Sbjct 642546 TCTGATAGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCA 642487 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || || ||||| || ||||||||||| ||| ||||| || | ||| || | Sbjct 642486 GGTGGAATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGAC 642427 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| || ||||| ||||| |||||||| || ||||| |||||||| Sbjct 642426 TCCACCTCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374 Score = 105 bits (116), Expect = 2e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 ||| | || ||||| | || | || | ||| | ||| |||||||| ||||| || || Sbjct 643133 TTTGTACCACCTCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTAR 643074 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || || || ||||| ||||| |||| ||| || || ||||| || | |||||||| ||| Sbjct 643073 TCYGAKAGCGTTCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCA 643014 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || ||||| || ||||||||||| Sbjct 643013 GGTGGAATACCTTCCTTGTCCTGAATCTT 642985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397854165196