Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 223 4e-53 >seq5 Length=831479 Score = 223 bits (246), Expect = 4e-53 Identities = 589/894 (66%), Gaps = 29/894 (3%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| ||||| ||||| ||||| || || || ||||| || | || || || | Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| |||||||| |||||| || || | || | |||||| || | || Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCTCTTGTCACAACCAAGAGAA-ACAAG 305165 Query 21305 AA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || ||| || || |||||||| | |||||||||||| || || |||||||| | || Sbjct 305164 AAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAGTAA 305105 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 || | |||||||| | ||| ||| | || ||| || || ||||| | || || Sbjct 305104 GTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGATGAT 305045 Query 21424 ATTTATTA---TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480 || | | || | || || |||| || || || || | ||||| || Sbjct 305044 CTTGAGCACGATCTTGGAAT--CT-GGGGTATTGTTCAAATGGGAGAATAATAAACAAGC 304988 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 |||||| || ||||||||||| || | |||||||| || |||||||| ||||| || Sbjct 304987 AAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCTGG 304928 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCC 21600 ||| || ||||| ||||| ||||| || || || ||||| | ||| || || || || || Sbjct 304927 CATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAGATACC 304868 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCA 21660 ||||| || ||||| |||||||||| ||||||| || | | || ||| | ||||| Sbjct 304867 TTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAATGCATTTTCATCGCACATCCA 304808 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AA 21719 | | ||||| | ||||||||||||||||| ||| | ||||| || || || || Sbjct 304807 TCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATTGAATAA 304748 Query 21720 GA----TGAtt--ttt--ttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || |||| ||| || | |||| ||| | ||| Sbjct 304747 GAATTCCGATTCCTTTGGATCCTTGACATAGGT-------GTCAATCAATAAGGAGTAT- 304696 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 |||| ||||| || ||||| ||| || || || || || ||||| | || || | Sbjct 304695 -GTTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAGG 304637 Query 21832 ACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 ||| ||||| | | || || | |||| ||||| || || || ||||| || Sbjct 304636 GATTTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAGC 304577 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TTTTT 21948 |||||||| ||||| | | | || ||| ||| ||||||||| ||| | || || Sbjct 304576 AGCAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTGTT 304517 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 ||| || ||| || || || || || | |||||| | ||||| || || || Sbjct 304516 CCAGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGGC 304457 Query 22009 CTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 |||||| ||||| |||||| |||| ||| | ||||| || | ||||| || Sbjct 304456 CTTTTTGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGAGCACAAATCT 304403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900553995880