Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 165 7e-36 seq5 149 5e-31 seq6 113 4e-20 >seq2 Length=1335671 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| |||||||| | |||||||| || | || |||||||| ||| | Sbjct 4836 AAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATCT 4895 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| || |||| ||||| || ||||||||||| ||||||||||| || Sbjct 4896 TCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 4955 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | || ||||| || || || || || || | ||| | || || ||| Sbjct 4956 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTAC 5015 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| ||||||||| | || ||||| ||| ||||| | || ||| Sbjct 5016 AACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGGT 5066 >seq5 Length=831479 Score = 149 bits (164), Expect = 5e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || ||||||||||||||||| || || ||||| ||||| || ||||| | ||||| ||| Sbjct 265439 GTCAAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAA 265498 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | |||||| | ||| | |||| ||||| || ||||| ||||| ||||| ||||| Sbjct 265499 TCTTCTGATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCT 265558 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || |||||| | | || || || || || || ||||| || | ||| | ||||| Sbjct 265559 GACCAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGAC 265618 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||||| ||||| |||||||| | || || || ||| |||| | || ||| || Sbjct 265619 TACAACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGGTATT 265675 >seq6 Length=817167 Score = 113 bits (124), Expect = 4e-20 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 ||||| || ||||| |||||||| ||||||||||| || ||||| | | || ||||| Sbjct 642979 AAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAGAGATTGATCTTTGCG 643038 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || || || |||||||| | || | || || ||||||||||||||||||||||| Sbjct 643039 GGTAAGCAATTAGAGGACGGAAGAACGCTMTCRGAYTACAACATTCAAAAAGAATCCACA 643098 Query 22417 ATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||||| || ||| ||||| | || ||| Sbjct 643099 CTCCATTTGGTGTTGAGATTGAGAGGTGGT 643128 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || |||||||| |||| || || ||||| | | Sbjct 642374 ATGCAGATCTTTGTCAAGACACTTACGGGTAAAACTATCACCCTAGAGGTGGAGTCGTCA 642433 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||||| || ||||| |||||||| ||||||||||| || ||| Sbjct 642434 GACACCATTGACAATGTGAAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAA 642493 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || | | || ||||| || |||||||| || || Sbjct 642494 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGA 642528 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| ||||| ||||| || | || || || || |||| ||||| |||||| | Sbjct 641642 AGATGCAGATTTTCGTTAAGACACTTACAGGCAAGACCATCACCCTTGAGGTGGAATCTT 641701 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | ||||| || || || |||||||| ||||||||||| || | Sbjct 641702 CGGACACCATTGACAACGTGAAACAGAAGATCCAGGACAAGGAAGGTATTCCACCTGACC 641761 Query 22337 AACAACGTCTTATATTTGCCGG 22358 |||| | | || ||||| || Sbjct 641762 AACAGAGATTGATCTTTGCGGG 641783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727810728905