Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 7e-29
seq5 127 1e-24
seq6 105 5e-18
>seq2
Length=1335671
Score = 141 bits (156), Expect = 7e-29
Identities = 174/233 (75%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||||| |||||| || ||||| |||||||| || || ||||| |||||||| || | |
Sbjct 5065 CCACCTCTCAATCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAT 5006
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| |||| ||||||| ||||| || ||||| | || || | |||||||| |||
Sbjct 5005 AAGG-TTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 4947
Query 15069 AATTCCTTCCTTGTCACAAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||| ||||||||||| || ||||||| ||| | || || || ||| | |||
Sbjct 4946 AATACCTTCCTTGTCTTGGATCTTTTGCTTG--ACATTGTCAATGGTGTCGGAAGATTCG 4889
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || | ||||||||| ||||| || || ||||| || ||||||||||| ||
Sbjct 4888 ACTTCAAGGGTAATGGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTT 4836
>seq5
Length=831479
Score = 127 bits (140), Expect = 1e-24
Identities = 171/234 (73%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| ||||| || || || ||||| || || || ||||| |||||||| ||| |
Sbjct 265671 CCACCTCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG--G 265614
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| ||||||||||||| || |||||| | ||||| | |||||||| ||
Sbjct 265613 ATAAGGTTCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTG 265554
Query 15068 GAATTCCTTCCTTGTCACAAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
| || |||||||| || || ||||||| || | || || ||||| | |||
Sbjct 265553 GGATACCTTCCTTATCTTGGATCTTTTGCTTG--ACGTTGTCAATGGTATCAGAAGATTC 265496
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| ||||| || ||||| ||||| || | || || |||||||||||||| ||
Sbjct 265495 AACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTT 265442
>seq6
Length=817167
Score = 105 bits (116), Expect = 5e-18
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || ||||| || || || |||||||| |||||||| ||
Sbjct 643127 CCACCTCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAK 643068
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| |||| |||| |||||||| || || || | ||||| | ||||||||| ||||
Sbjct 643067 AGCGTTCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGA 643008
Query 15070 ATTCCTTCCTTGTC 15083
|| |||||||||||
Sbjct 643007 ATACCTTCCTTGTC 642994
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 15014 TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTC 15073
|||| ||||||| || ||||| ||||| | ||||| | ||||||||| |||||| |
Sbjct 642536 TTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATAC 642477
Query 15074 CTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTA 15133
|||||||||| ||| || ||| ||| | || || || || || || ||||
Sbjct 642476 CTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACCTCTA 642417
Query 15134 AGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||| || |||||||| || || || || ||||| || ||||||
Sbjct 642416 GGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCATA 642373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357391838838545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |