Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 123 6e-23 seq5 114 3e-20 seq6 84.2 5e-11 seq4 84.2 5e-11 >seq2 Length=1335671 Score = 123 bits (136), Expect = 6e-23 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| || || || |||||||||| ||||||||||| || || || || Sbjct 5054 TCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 4995 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| || || ||||| | | || ||||| || ||| ||||| Sbjct 4994 GTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4935 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||||||||| || || | |||||| | | ||| || || | || || Sbjct 4934 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAGGGTAAT 4875 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAG 199637 |||||||| || || ||||| || |||||||| |||||||| Sbjct 4874 GGTCTTACCGGTAAGGGTTTTAACGAAAATTTG---CATTTTAG 4834 >seq5 Length=831479 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||| | || || || || Sbjct 265660 TCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGTTCTACC 265601 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | ||||| || |||||||| | | || ||||| || || ||||| Sbjct 265600 GTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 265541 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||||||||| ||| || | ||| || | | ||| || || || ||||| Sbjct 265540 ATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAAAGTGAT 265481 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | || || ||||||||||| Sbjct 265480 GGTCTTACCAGTTAAGGTCTTGACAAAAATTTG 265448 >seq6 Length=817167 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 199466 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATT 199525 || ||||| ||||||| ||| || || || ||||| | | ||| ||||| || ||| Sbjct 642537 GTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATA 642478 Query 199526 CCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCC 199585 ||||| ||||||||||| || ||||| || | |||||||| | || || || Sbjct 642477 CCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACCTCT 642418 Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || |||||||| || || || ||||| || || Sbjct 642417 AGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTG 642377 >seq4 Length=942658 Score = 84.2 bits (92), Expect = 5e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 || ||||| || | ||||| || |||| || | || || ||||||| || | Sbjct 333600 GCATCCTTATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTGCTTCCAAAATAGAGTAC 333541 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || | || ||| || || | ||| | ||| |||| ||||||||||| ||| | || || Sbjct 333540 CATAATTTTTGAGCCTTGATGGTGGATCTACCTCTACCTTCTTTTTCATATTTTTCGTAT 333481 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCG-TCAAGACCGGGAGCTTCCTTCGGACAAAA 167946 | |||||||| || | || |||| || |||| ||| || ||||| | || |||| Sbjct 333480 AATTCTTCGAATTCATCACCATAAACATCACTCAA-ACCTGGGGCTTCACTTGGTGAAAA 333422 Query 167947 GAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| |||| | | || | | || || ||||||||||| | || ||| |||| | || Sbjct 333421 AAGAGTCCATTCTTGATTGTTTTCAACTCTCTTCATGAATAAATCAGAAATCCATAATGC 333362 Query 168007 GTAGAACAATTGCCTTGC 168024 |||||| | ||||| Sbjct 333361 AGGGAACAAATCTCTTGC 333344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921041117479