Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2 188 2e-42
seq5 167 5e-36
seq6 116 8e-21
seq4 89.7 1e-12
>seq2
Length=1335671
Score = 188 bits (208), Expect = 2e-42
Identities = 176/224 (79%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | |||||| ||||| || ||||| || ||||| || | | ||
Sbjct 5060 TCTCAATCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGT 5001
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| | |||||||| || ||||| | || ||||||||| || ||||| ||
Sbjct 5000 TCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACC 4941
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| |||||||| || ||||||||||| || ||||||||||| ||| ||| ||||||||
Sbjct 4940 TTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAG 4881
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||||| ||||| || || | ||||| ||||| | ||||||||
Sbjct 4880 GGTAATGGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTT 4837
>seq5
Length=831479
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | |||||||||||| || ||||| || ||||| |||| | ||
Sbjct 265666 TCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGT 265607
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| | |||||||| |||||||| | || ||||||||| || || || ||
Sbjct 265606 TCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACC 265547
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || ||||| || |||||||||||||| |||||||| || ||| ||| ||||| |
Sbjct 265546 TTCCTTATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAA 265487
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || || || || || || | ||||||
Sbjct 265486 AGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 265445
>seq6
Length=817167
Score = 116 bits (128), Expect = 8e-21
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | |||||| || | || || ||||| ||||||||||| ||||| || | || ||
Sbjct 643122 TCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAKAGCGT 643063
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || || || | |||||||| || ||||| | || |||||||| || ||||| ||
Sbjct 643062 TCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACC 643003
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074
||| ||||| ||||| || || || ||||| |||||
Sbjct 643002 TTCCTTGTCCTGAATCTTCTGTTTCACGTTGTCAAT 642967
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060
|| || ||||| | || |||||||| || ||||| ||||| ||||| || || || ||
Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724
Query 195061 TTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120
|| ||||| ||||||||||||||| |||||| |||||||| | ||||| ||||| |
Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664
Query 195121 GTTTTTACGAACACTTGCAT 195140
|| || ||||| | |||||
Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644
Score = 98.7 bits (108), Expect = 2e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033
|| ||||| || ||||| | ||| ||||| || ||||| | || |||||||| || |||
Sbjct 642540 AGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 642481
Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093
|| ||||| ||||| ||||| || || || || || ||||||||||| || |||||
Sbjct 642480 ATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACC 642421
Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| | || || || || | || || || || | |||||
Sbjct 642420 TCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374
>seq4
Length=942658
Score = 89.7 bits (98), Expect = 1e-12
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTGA 160571
||||||| || || || |||||| | || | |||||| || | || | || |
Sbjct 333281 TGGCACGCAGATATTTTAGACTTTATTGACATTAGAAAAAACCATG--GTAAGGAAGAAA 333338
Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631
| ||||| ||||| | ||| || | |||| ||| ||| | ||||||||||||||
Sbjct 333339 TCAGAGCAAGAGATTTGTTCCCTGCATTATGGATTTCTGATTTATTCATGAAGAGAGTTG 333398
Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGA-TGATGTT 160690
|| ||||| || |||| ||||| | || | |||||| || || |||| |||||||
Sbjct 333399 AAAACAATCAAGAATGGACTCTTTTTTCACCAAGTGAAGCCCCAGG-TTTGAGTGATGTT 333457
Query 160691 TATGGTTCCGAGTTCG-AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAG 160742
|||||| || |||| ||| | | || |||| ||| |||||||| || ||||
Sbjct 333458 TATGGTGATGAATTCGAAGAAT-TATACGAAAAATATGAAAAAGAAGGTAGAG 333509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481074036379
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |