Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-42 seq5 167 5e-36 seq6 116 8e-21 seq4 89.7 1e-12 >seq2 Length=1335671 Score = 188 bits (208), Expect = 2e-42 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||| ||||| || ||||| || ||||| || | | || Sbjct 5060 TCTCAATCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGT 5001 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || ||||| | || ||||||||| || ||||| || Sbjct 5000 TCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACC 4941 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || ||||||||||| || ||||||||||| ||| ||| |||||||| Sbjct 4940 TTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAG 4881 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || || | ||||| ||||| | |||||||| Sbjct 4880 GGTAATGGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTT 4837 >seq5 Length=831479 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||||||||| || ||||| || ||||| |||| | || Sbjct 265666 TCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGT 265607 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| |||||||| | || ||||||||| || || || || Sbjct 265606 TCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACC 265547 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || |||||||||||||| |||||||| || ||| ||| ||||| | Sbjct 265546 TTCCTTATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAA 265487 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || || || || || || | |||||| Sbjct 265486 AGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 265445 >seq6 Length=817167 Score = 116 bits (128), Expect = 8e-21 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || || ||||| ||||||||||| ||||| || | || || Sbjct 643122 TCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAKAGCGT 643063 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || | |||||||| || ||||| | || |||||||| || ||||| || Sbjct 643062 TCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACC 643003 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| ||||| ||||| || || || ||||| ||||| Sbjct 643002 TTCCTTGTCCTGAATCTTCTGTTTCACGTTGTCAAT 642967 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || ||||| | || |||||||| || ||||| ||||| ||||| || || || || Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724 Query 195061 TTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||| ||||||||||||||| |||||| |||||||| | ||||| ||||| | Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 || ||||| || ||||| | ||| ||||| || ||||| | || |||||||| || ||| Sbjct 642540 AGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 642481 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || ||||| ||||| ||||| || || || || || ||||||||||| || ||||| Sbjct 642480 ATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACC 642421 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | || || || || | || || || || | ||||| Sbjct 642420 TCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374 >seq4 Length=942658 Score = 89.7 bits (98), Expect = 1e-12 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTGA 160571 ||||||| || || || |||||| | || | |||||| || | || | || | Sbjct 333281 TGGCACGCAGATATTTTAGACTTTATTGACATTAGAAAAAACCATG--GTAAGGAAGAAA 333338 Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631 | ||||| ||||| | ||| || | |||| ||| ||| | |||||||||||||| Sbjct 333339 TCAGAGCAAGAGATTTGTTCCCTGCATTATGGATTTCTGATTTATTCATGAAGAGAGTTG 333398 Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGA-TGATGTT 160690 || ||||| || |||| ||||| | || | |||||| || || |||| ||||||| Sbjct 333399 AAAACAATCAAGAATGGACTCTTTTTTCACCAAGTGAAGCCCCAGG-TTTGAGTGATGTT 333457 Query 160691 TATGGTTCCGAGTTCG-AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAG 160742 |||||| || |||| ||| | | || |||| ||| |||||||| || |||| Sbjct 333458 TATGGTGATGAATTCGAAGAAT-TATACGAAAAATATGAAAAAGAAGGTAGAG 333509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481074036379