Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 499 3e-136 seq5 291 9e-74 seq3 113 5e-20 >seq4 Length=942658 Score = 499 bits (552), Expect = 3e-136 Identities = 1216/1839 (66%), Gaps = 49/1839 (3%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| || ||||||||||||||||| || || ||||||||||||||||||| Sbjct 334602 GTTCTCAAGTAATACATACCAGTCTTCAATCCCTTCTTCCATCCATAGAAATGCATCGAT 334543 Query 47073 GTTAATTTAGAATAACTAGG-TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || | |||| |||| |||| | ||||| || | | |||| |||||||| Sbjct 334542 GTCAGTTTACCCATGGTAGGGTTCTTTAGG-TGAATGTTCATACTTTGAGATTGATCAAT 334484 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | |||||||| || || |||||||| | |||| | |||| | || ||||| ||||| Sbjct 334483 GTAGGCACCTCTGTCGGCAGCCATATCGATAATAGACTTTTGCGAGATTTCCCAAACTGT 334424 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTA---TTTTGAATAGATCCTCCgtt 47248 || || || | || || |||| ||| | |||| |||||||| || || ||| Sbjct 334423 CTTGTAGATATCCTTGATTTCTTGTGGAATGTTAGGCAAGTTTTGAATCGACCC---GTT 334367 Query 47249 ttct---ataattttgtttttta---attcatttgaccaaagttttcgttcagttaatgt 47302 || ||||| | ||| || | | || || ||| | | ||| || Sbjct 334366 GTCAGAAATAATGTGGTTCTTCATGGAATCGTT---CCATAATCCCATATCAACCAAGTC 334310 Query 47303 ttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATAT 47362 | | || | | ||| |||||||| || || || || | || ||||| | | ||| || Sbjct 334309 TCTCAACATGTAAGGGTTAACAATCTGGAACTCACCGGCTAAAACTCTTCTGGAATAAAT 334250 Query 47363 ATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGT 47422 |||| || |||||||| | | ||||||| | || |||||||||| ||| || || || Sbjct 334249 ATTAGAGGTGTATGGTTCAAAACATTCATTGTAACCCAAAATTTGAGAAGTGGAGGCAGT 334190 Query 47423 AGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNN 47482 ||||| | |||||||||||| ||||| | ||| | || |||| Sbjct 334189 TGGCATTGGTGCAACTAATAAAGAGTTTCTCAAACCAAACTTGGAAATCTTTTCCTTTAA 334130 Query 47483 NNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCC 47542 | ||||||||| | || | ||| | ||| |||||| |||| | | || Sbjct 334129 TCCATCCCAATCCCATAAGTCGGTTGGCTTCTTACCCCACAAATCAAATTGTAATAAACC 334070 Query 47543 TTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACA 47602 || |||| ||||| || | || |||| ||| ||||||| | ||| || || ||| Sbjct 334069 TTGACTTGCTGGAGAGCCTTCGTAGGTTTCATATGGACCGTCAACTTTGGCCAGCTCAAT 334010 Query 47603 ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC 47662 ||| |||||||||| | | ||||| |||||||| |||| ||||||||| | || || Sbjct 334009 ACTAGCTTCCAATGAAGCGTGGTATATAGTTTCAAAAATTTGTATGTTTAGTTCTCTAGC 333950 Query 47663 TTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 | | || ||||| || | || | ||| || || |||||||| || Sbjct 333949 CTGGGCAGAATCAAATGGCAATCTTAACATCATGAAGGCATCAGCTAAACCTTGAACCCC 333890 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 || | |||||||||| | | | || || ||||||| | ||||| | ||| Sbjct 333889 AACAGCAATTGGTCTGTTTCTCATGTTGGATCTTCTAGCTTCTTCAACCGGATAATAGTT 333830 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 | | || || || ||||| | | ||||| |||||| | Sbjct 333829 TCTGTCGATGATCTTATTCAAATTCTTGGCAACAACTTTGGTTATTTCATGTAATTTCTC 333770 Query 47843 AAAATCAAAC---------TTGTTAT---TTATAACAAAC-CTATTAAGTGCTATAGATG 47889 ||| | | || || | || || |||||| || ||| ||| | |||| Sbjct 333769 AAAGTTATACCACGATGAGTTTTCATCACTTTCAACAAATGCTGGTAA-TGCAACTGATG 333711 Query 47890 CTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGAT 47949 ||| ||||| ||||| || || | ||| || |||| | || ||| ||| |||| Sbjct 333710 CTAAGTTACAAACAGCAACTTCTTCTGGGGAAGAGTATTCAACAATCTCACAACACAGAT 333651 Query 47950 TACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTT 48007 || | ||||||| ||||||| || || || || ||| |||| ||||| ||||| Sbjct 333650 TAGAAGATTTGATCATACCCAAGTTCTGTTGGTTGGATTTCC--TGTTGCATGCATCCTT 333593 Query 48008 GTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGT 48067 |||||||| || ||||| || |||||| |||| | ||| | ||||| | ||| | | Sbjct 333592 ATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTGCTTCCAAAATAGAGTACCATAATTT 333533 Query 48068 CCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127 |||||| || | |||| || || || | ||| ||||| ||||| | || Sbjct 333532 TTGAGCCTTGATGGTGGATCTACCTCTACCTTCTTTTTCATATTTTTCGTATAATTCTTC 333473 Query 48128 AAATTCATCCCCATACACATTA-TCTAACCCAGGACATTCATTAGGACACATCAATGACC 48186 |||||||| ||||| |||| | || |||| || | |||| | || | | | | || Sbjct 333472 GAATTCATCACCATAAACATCACTCAAACCTGGGGC-TTCACTTGGTGAAAAAAGAGTCC 333414 Query 48187 AATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATA 48246 | || | || |||| ||||| |||| |||| ||| | ||||| | || || | Sbjct 333413 ATTCTTGATTGTTTTCAACTCTCTTCATGAATAAATCAGAAATCCATAATGCAGGGAACA 333354 Query 48247 AATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTA 48306 |||| || | ||| | |||||| || ||| || || ||| |||| |||||| | | Sbjct 333353 AATCTCTTGCTCTGATTTCTTCCTTACCATGGTTTTTTCTAATGTCAATAAAGTCTAAAA 333294 Query 48307 TATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTT 48366 |||| || |||||||| || | ||||| || | |||| |||| ||| ||||| |||| Sbjct 333293 TATCTGCGTGCCATGGCTCGAGATATAAAGCAAAGGCACCAGGTCTTTTGTTACCACCTT 333234 Query 48367 GATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATA 48426 |||| | |||||| || ||||||||| | ||||| | |||||| | ||||| || ||| Sbjct 333233 GATCGACATATCTAGCGGTATTGTTAAACACTCTAACCATTGGAATGATACCGTTGGATG 333174 Query 48427 TACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCT 48485 |||| ||||| || | ||||||| || | | ||| ||||| ||| || || ||| Sbjct 333173 TACCGTTGGTACCTGCAATATAAGAACCGGTCGATCTAATATTGTGAATGTGTAA-ACCA 333115 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 |||||||| || | || || || |||||||| |||| | |||||||||||| ||||| Sbjct 333114 ATACCACCAGCAGTCTTGGAAATCAGAGCACATTGTTTTAAGGTATCATAAATACCTTCA 333055 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC---AAGTT 48602 ||| ||||||| |||| | || |||||| |||||||| ||| | || Sbjct 333054 ATAGAATCATCTTGCATAGCAACTAAGAAACAAGAAGACATTT---GATTTCTTGGGGTA 332998 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662 || | |||||| || |||||||| ||||| |||| || | | || | | ||||| Sbjct 332997 CCAGCATTAAACAAAGTTGGAGAAGCATGGGTAAAGTATCTTTTAGACATTAGATTATAG 332938 Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 ||||||||| || | |||||| ||| ||||| | || || | ||| | || | Sbjct 332937 GTTTCAATAGCACTTTGTATATCATCACCATGAATACCAACAGCAACTCTCATAATCAAA 332878 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | ||||||||||| |||||| ||| | | |||| | ||| ||| ||||||| ||| Sbjct 332877 TGCTGAGGTCTTTCTGCAATTTGACCATTCAATCTCAACAAATAAGATCTTTCCAACGTT 332818 Query 48783 TTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCAT 48819 || ||||||||||||||||| ||||| || |||||| Sbjct 332817 TTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCAT 332781 >seq5 Length=831479 Score = 291 bits (322), Expect = 9e-74 Identities = 606/889 (68%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || |||| ||||| ||||||||||| || || || || |||| || || | Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||| |||||| | || || ||| | || | | || | | || Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCTCTTGTCACAACCAAGAGAAACAAGA 305164 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || ||||||| | |||| ||||| ||| ||||| || | ||| Sbjct 305163 AGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAGTAAG 305104 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || | || || || ||||| | | || |||||| || | || || ||| || || Sbjct 305103 TTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGATGATC 305044 Query 18910 GATACAACTCTATCTTC-ATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACATGCA 18966 | | | | ||||| | | | |||||| | | ||| || | ||||| ||| Sbjct 305043 --TTGAGCACGATCTTGGAATCTG-GGGTATTGTTCAAATGGGAGAATAATAAACAAGCA 304987 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 ||||| |||| || || ||||| | || ||||| || |||||||| ||||| ||| Sbjct 304986 AAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCTGGC 304927 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||| ||||||||||| |||||||| || |||||||| ||||| || || || |||||| Sbjct 304926 ATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAGATACCT 304867 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAATCC 19144 || || || ||||| ||||||| |||||| || |||| |||| | || |||| Sbjct 304866 TCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAAT--GCATTTTCATCGCACATCC 304809 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 || ||| ||||| || ||||| | ||| | |||||| || | || || | ||| |||| Sbjct 304808 ATCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATTGAATA 304749 Query 19205 GATACATACGCT-CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | | | || | | | || ||| || ||||| | || |||||||| ||| |||| Sbjct 304748 -AGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGTATGTTTCC 304690 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| || ||||| || || || || || || ||||| | ||||| | || || Sbjct 304689 GAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCAGGGATTTGC 304630 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 || ||| | || |||| ||||||||||| || || || ||||| ||| |||||| Sbjct 304629 ACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAGCAGCAAAA 304570 Query 19384 AATGCTAATACATGTTTAAT--AAAATGTTT-TTCATC--TGAGGTTAATGTATTCCAAT 19438 || || || || |||| ||||| ||| | ||| | || | || ||||| | Sbjct 304569 AAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTG--TTCCAGT 304512 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | | | || ||||| || || | |||||| | ||||| ||||| || || || |||| Sbjct 304511 CGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGGCCTTTT 304452 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 | ||||| | ||| || ||| | |||| || || || | |||||||| Sbjct 304451 TGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGAGCACAAATCT 304403 >seq3 Length=1238071 Score = 113 bits (124), Expect = 5e-20 Identities = 198/287 (69%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 48184 ACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAA 48243 |||||| ||||| ||| ||| | |||| || | ||| |||||||| || || | || Sbjct 367299 ACCAATAATCATCGCTTTCCACTTTTTTCATGAACAAATCGGGTATCCATAGTGCAAGAA 367240 Query 48244 ATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG-TTCAAGAAAGTCC 48302 ||| || || | ||| | |||||| || ||| || |||| ||||| ||| || Sbjct 367239 ATAGGTCTCTTGCCCTTCTTGCTTCATCACCRTGATTTTTTCTAAGATTCAAAAAA-TCA 367181 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 | | ||| |||||||| |||||||||||||| | |||| |||| |||||| ||| Sbjct 367180 AAAACATCCGCATGCCAAGGTTCTAAATATATACAAAAAGCACCAGGTCTTTTATTTCCT 367121 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 ||||| || | |||||| ||||| || | ||| | |||| || || | |||| Sbjct 367120 CCTTGGTCAACATATCTTGCAGTTGAATTGAATACTTTCAACAGAGGAACCAAACCAGAA 367061 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || | ||||| | || ||| | || ||||| ||||| ||||| Sbjct 367060 GACGTCCCATTAGAACCTTTAATGTGGCTACCACTGGCTCTKATATT 367014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108540024680