Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 201 6e-47 seq3 154 7e-33 >seq4 Length=942658 Score = 201 bits (222), Expect = 6e-47 Identities = 427/626 (68%), Gaps = 21/626 (3%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| ||| ||| |||||||| | |||||| | |||| || |||||||| ||||| Sbjct 333399 TCAACTCTCTTCATGAATAAATCAGAAATCCATAATGCAGGGAACAAATCTCTTGCTCTG 333340 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 |||||||| || || || || ||| | | || | || || |||||||||| ||||||| Sbjct 333339 ATTTCTTCCTTACCATGGTTTTTTCTAATGTCAATAAAGTCTAAAATATCTGCGTGCCAT 333280 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||| | |||||| ||| |||||| ||||||||||| || ||||| Sbjct 333279 GGCTCGAGATATAAAGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCGACATATCTA 333220 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCT 26160 || || | || || ||| | | |||||||| | || | |||| | | ||||| || | Sbjct 333219 GCGGTATTGTTAAACACTCTAACCATTGGAA-TGATACCGTTGGATGTACCGTTGGTACC 333161 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 ||| | || || ||||||||||||| |||| || | ||| || |||||||| Sbjct 333160 TGCAATATAAGAACCGGTCGATCTAATATTGTGAATGTGTAAACCAATACCACCAGCAGT 333101 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 || ||||| ||||| | | | ||||| |||| |||| || |||| ||| Sbjct 333100 CTTGGAAATCAGAGCACATTGTTTTAAGGTATCATAAATACCTTCAATAGAATCATCTTG 333041 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTT---GTTCCTGAATTAAATAA 26337 ||| | | ||| ||||||||||| | ||| || || || || | |||||| || Sbjct 333040 CATAGCAACTAAGAAACAAGAAGACATTTG---ATTTCTTGGGGTACCAGCATTAAACAA 332984 Query 26338 TGTCGGTGTAGCATGAGTATAATATCCTTCACTCA-AAGCTGTATAAGTTTCA--AGAAC 26394 || || | |||||| ||| | |||| || | || || | |||| |||||| || || Sbjct 332983 AGTTGGAGAAGCATGGGTAAAGTATCTTTTAGACATTAGAT-TATAGGTTTCAATAGCAC 332925 Query 26395 TTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCG 26454 || | |||| | | | || ||| ||| ||| | || || ||||||| Sbjct 332924 TT--TGTATATCATCACCATGAATACCAACAGCAACTCTCATAATCAAATGCTGAGGTCT 332867 Query 26455 TTCAATTACATTATTTTCCGCATC--TCTAATCAAATAAGATTTTTCTAAAGTTTTCAAT 26512 ||| | || |||| | || ||| | |||||||||| |||| || ||||| || Sbjct 332866 TTC---TGCA--ATTTGACCATTCAATCTCAACAAATAAGATCTTTCCAACGTTTTGAAA 332812 Query 26513 CCAAAATAATCATGATTGAAATCTCT 26538 |||||||| | | ||||||||||| Sbjct 332811 CCAAAATAGTTGTAGTTGAAATCTCT 332786 Score = 114 bits (126), Expect = 7e-21 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 25028 AAAACTCTTCTT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTA 25085 ||||||||||| || ||| || || ||| ||||||||||||||||||| | || | Sbjct 334269 AAAACTCTTCTGGAATAAATA--TTAGAGGTGTATGGTTCAAAACATTCATTGTAACCCA 334212 Query 25086 AGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCAT 25145 | ||||||||||| || || ||||||||| ||| | ||||| || |||||||||||| Sbjct 334211 AAATTTGAGAAGTGGAGGCAGTTGGCATTGGTGCAACTAATAAAGAGTTTCTCAAACCAA 334152 Query 25146 ATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 | || ||||| || |||||| ||||||||| Sbjct 334151 ACTTGGAAATCTTTTCCTTTAATCCATCCCAATC 334118 >seq3 Length=1238071 Score = 154 bits (170), Expect = 7e-33 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 25898 AATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 |||||| ||||| | ||| || ||||| | ||| || ||||| || ||||| | | Sbjct 367306 AATAAACACCAATAATCATCGCTTTCCACTTTTTTCATGAACAAATCGGGTATCCATAGT 367247 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 ||| ||||| ||||| || || || |||| | || ||||| ||| | |||| || Sbjct 367246 GCAAGAAATAGGTCTCTTGCCCTTCTTGCTTCATCACCRTGATTTTTTCTAAGATTCAAA 367187 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 |||||||||| ||| | ||||| ||||||||||| ||| |||| ||| |||||| Sbjct 367186 AAATCAAAAACATCCGCATGCCAAGGTTCTAAATATATACAAAAAGCACCAGGTCTTTTA 367127 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 ||| ||||| || || |||||||||||| |||||| |||||||||| ||||| || Sbjct 367126 TTTCCTCCTTGGTCAACATATCTTGCAGTTGAATTGAATACTTTCAACAGAGGAACCAAA 367067 Query 26138 CCAG 26141 |||| Sbjct 367066 CCAG 367063 Score = 141 bits (156), Expect = 5e-29 Identities = 329/483 (68%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 24704 TAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTT 24763 ||||||||||| ||||||||| || ||||| ||||||||||||| || ||||| Sbjct 368464 TAATACATTCCTGTTTTCAATCCTTTTTTCCAGGCGTAAAAATGCATGCTGGTAAGTTTG 368405 Query 24764 GCAA-TGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTG 24822 | || ||| | ||| | |||||||||||| ||| | ||| ||||| | Sbjct 368404 GAAAATGTGATATCTTTC-ATAAACAAGTTCATACTTTGTGATTGATCCACAAATGGGCC 368346 Query 24823 TCTATCTGCAGCTAAGTCAATGATCG--TTTTCATCGATATATCGTAAGCTGTTTTGTAT 24880 |||||| || ||||| || || || |||| | || || || | | |||||||| Sbjct 368345 TCTATCAGCTGCTAAATCTATAATGTGCTTTTGA--GAGATTTCCCACACWGTTTTGTAA 368288 Query 24881 CTCTCTTTTATC-TCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAA 24939 || || | ||| | ||||| | |||||||||||||| || | | | |||| Sbjct 368287 AGA-CTCCTAACATCACTAGGAATCTGATCTATATTTTGAACTGAACCGTCATGT-TCAA 368230 Query 24940 TAGATTCAATCT--CATATTCGGTGT-CCAAAGATTAATTTTTTCAAGATCTCTAATCAA 24996 | |||| ||| | || | ||| || ||| | | | | | |||| ||| ||| Sbjct 368229 T-GATTAAATTTTTCA-AGTCGCTGGACCATAAACCCAAATCACATAAATCTTTAACCAA 368172 Query 24997 GTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGT 25056 | |||||| | | ||||| || || ||||| ||||| || ||| |||||| || Sbjct 368171 ATATTTATTCACAACCTGGAATTCGCCTGATAAAACCCTTCTAATGAATATGTTTGAGGT 368112 Query 25057 GAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAA 25116 | |||||||||||||||||| ||||||||| || ||| | || || || ||||| || Sbjct 368111 AATTGGTTCAAAACATTCATTGAATCCTAAGATCTGTGAACTGGACGCAGTGGGCATCAA 368052 Query 25117 TGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCA 25176 || | || || ||||| | | ||| |||||| |||| |||| ||| || |||||| Sbjct 368051 AGCAACCAAAAGGGAATTACGTACACCGTATTTACCAATATCTTTTTTCAAGGAATCCCA 367992 Query 25177 ATC 25179 ||| Sbjct 367991 ATC 367989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039885894775