Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5 259 7e-64
seq2 125 1e-23
>seq5
Length=831479
Score = 259 bits (286), Expect = 7e-64
Identities = 579/859 (67%), Gaps = 30/859 (3%)
Strand=Plus/Minus
Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
|| |||| ||| || |||| | || || ||||| || ||||| || | || || ||
Sbjct 305286 GCCTTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATG 305227
Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGT----ATTAATTC 17976
| ||| |||||||| ||||| ||| || || | |||||| | ||
Sbjct 305226 TTTTCCATGAAATCAAAAGGATTTGTGACGTTGTA-----TCTCTTGTCACAACCAAGAG 305172
Query 17977 GTATAATAA-TCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035
| || || ||| || || ||||||||||||||||| |||||||||| |||||||
Sbjct 305171 AAACAAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATAC 305112
Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095
| |||| || || ||||| || | | | || || || || ||||||| ||||
Sbjct 305111 CAAGTAAGTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTT 305052
Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTT--ATTAATTATGTGATTATAATATAA 18153
|| || || | || ||| |||| ||| | || | | || | ||||
Sbjct 305051 CGATGATCTTGAGCAC----GATCTTGG-AATCTGGGGTATTGTTCAAATGGGAGAATAA 304997
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| |||||||| ||||||||||||||||||||| | ||||||||||| ||| ||
Sbjct 304996 TAAACAAGCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGT 304937
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAA 18272
|| || ||||| | |||||||||||| | ||| || || || || |||| | | || |
Sbjct 304936 CAAACCTGGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGC-AAACGATCCGGAGA 304878
Query 18273 AGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTT--AT 18329
| || ||||| ||||| || || || | |||||||||| | || | || |||| ||
Sbjct 304877 AAAAGATACCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAATGCATTTTCAT 304818
Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389
|| | |||||| | ||||| || | | ||||| || || | || |
Sbjct 304817 CGCAC---ATCCATCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAA 304761
Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449
| ||||| || || || ||| || | ||| || | ||| ||||| || || || |
Sbjct 304760 TGGCATTGAATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGG 304701
Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509
| || |||| ||||| ||| ||||||| || || |||| ||| || | | || |
Sbjct 304700 AGTATGTTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTT 304641
Query 18510 C-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568
| ||||| ||| | ||| | || |||| |||||||| || || || ||||| ||
Sbjct 304640 CAGGGAT-TTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCT 304582
Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG---A 18625
| || || ||||| ||||| || |||||||| | |||| ||||| || ||
Sbjct 304581 GAAGCAGCAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTG 304522
Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685
|||||||| || | || || || || | |||| |||||| | ||||| ||||| | |
Sbjct 304521 TTGTTCCAGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCT 304462
Query 18686 TCGGCCTGTTTGTACATTT 18704
||||||| |||||||||||
Sbjct 304461 TCGGCCTTTTTGTACATTT 304443
Score = 145 bits (160), Expect = 1e-29
Identities = 173/233 (74%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| ||| | || || || ||||| || || || || |||||||| ||| |
Sbjct 265442 AAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCT 265501
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||||| ||| ||||| || | || || |||||||| ||||| || || || ||
Sbjct 265502 TCTGATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGAC 265561
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | || |||||||| | ||||| ||||| ||||| || ||
Sbjct 265562 CAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTAC 265621
Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| | ||||||| || | || ||||| || ||||| ||||||||||| |||
Sbjct 265622 A--ACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGGT 265672
>seq2
Length=1335671
Score = 125 bits (138), Expect = 1e-23
Identities = 170/235 (72%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878
|||||||||||| || ||||||| | || || || || ||||| | |||||||||
Sbjct 4835 TAAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATC 4894
Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938
||| || | ||| || || || | || || ||||| || ||||| || || || ||
Sbjct 4895 TTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGA 4954
Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998
||||||||||| || | ||| |||||||| | ||||| ||||| ||||| || ||
Sbjct 4955 CCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTA 5014
Query 155999 TAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| | ||||||| || | || ||||| ||||| || ||||| ||||| ||||
Sbjct 5015 CA--ACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGGTG 5067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871661509200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |