Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 259 7e-64 seq2 125 1e-23 >seq5 Length=831479 Score = 259 bits (286), Expect = 7e-64 Identities = 579/859 (67%), Gaps = 30/859 (3%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || |||| | || || ||||| || ||||| || | || || || Sbjct 305286 GCCTTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATG 305227 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGT----ATTAATTC 17976 | ||| |||||||| ||||| ||| || || | |||||| | || Sbjct 305226 TTTTCCATGAAATCAAAAGGATTTGTGACGTTGTA-----TCTCTTGTCACAACCAAGAG 305172 Query 17977 GTATAATAA-TCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | || || ||| || || ||||||||||||||||| |||||||||| ||||||| Sbjct 305171 AAACAAGAAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATAC 305112 Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | |||| || || ||||| || | | | || || || || ||||||| |||| Sbjct 305111 CAAGTAAGTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTT 305052 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTT--ATTAATTATGTGATTATAATATAA 18153 || || || | || ||| |||| ||| | || | | || | |||| Sbjct 305051 CGATGATCTTGAGCAC----GATCTTGG-AATCTGGGGTATTGTTCAAATGGGAGAATAA 304997 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| ||||||||||||||||||||| | ||||||||||| ||| || Sbjct 304996 TAAACAAGCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGT 304937 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAA 18272 || || ||||| | |||||||||||| | ||| || || || || |||| | | || | Sbjct 304936 CAAACCTGGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGC-AAACGATCCGGAGA 304878 Query 18273 AGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTT--AT 18329 | || ||||| ||||| || || || | |||||||||| | || | || |||| || Sbjct 304877 AAAAGATACCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAATGCATTTTCAT 304818 Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || | |||||| | ||||| || | | ||||| || || | || | Sbjct 304817 CGCAC---ATCCATCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAA 304761 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 | ||||| || || || ||| || | ||| || | ||| ||||| || || || | Sbjct 304760 TGGCATTGAATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGG 304701 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || |||| ||||| ||| ||||||| || || |||| ||| || | | || | Sbjct 304700 AGTATGTTTCCGAATGGATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTT 304641 Query 18510 C-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||||| ||| | ||| | || |||| |||||||| || || || ||||| || Sbjct 304640 CAGGGAT-TTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCT 304582 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG---A 18625 | || || ||||| ||||| || |||||||| | |||| ||||| || || Sbjct 304581 GAAGCAGCAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTG 304522 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||||| || | || || || || | |||| |||||| | ||||| ||||| | | Sbjct 304521 TTGTTCCAGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCT 304462 Query 18686 TCGGCCTGTTTGTACATTT 18704 ||||||| ||||||||||| Sbjct 304461 TCGGCCTTTTTGTACATTT 304443 Score = 145 bits (160), Expect = 1e-29 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | || || || ||||| || || || || |||||||| ||| | Sbjct 265442 AAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCT 265501 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||||| || | || || |||||||| ||||| || || || || Sbjct 265502 TCTGATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGAC 265561 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | || |||||||| | ||||| ||||| ||||| || || Sbjct 265562 CAACAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTAC 265621 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | ||||||| || | || ||||| || ||||| ||||||||||| ||| Sbjct 265622 A--ACATCCAAAAGGAATCCACTCTTCACTTGGTGTTGAGATTAAGAGGTGGT 265672 >seq2 Length=1335671 Score = 125 bits (138), Expect = 1e-23 Identities = 170/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 |||||||||||| || ||||||| | || || || || ||||| | ||||||||| Sbjct 4835 TAAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATC 4894 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||| || | ||| || || || | || || ||||| || ||||| || || || || Sbjct 4895 TTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGA 4954 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||||| || | ||| |||||||| | ||||| ||||| ||||| || || Sbjct 4955 CCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTA 5014 Query 155999 TAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || ||||| ||||| || ||||| ||||| |||| Sbjct 5015 CA--ACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGGTG 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871661509200