Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 150 4e-31 seq2 149 1e-30 seq6 132 9e-26 >seq5 Length=831479 Score = 150 bits (166), Expect = 4e-31 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||||||||||||| | | || || || || | ||| | || || ||| | Sbjct 265682 GTTCAATAATACCACCTCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGT 265623 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || ||||| |||| | || || ||||| |||||||| ||||| ||||| |||| Sbjct 265622 TGTAGTCGGATAAGGTTCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTT 265563 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| |||||||| || || | || || || || | ||| | Sbjct 265562 GGTCAGGTGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAG 265503 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||||| ||||||| ||| ||||| ||||||||||| || || | ||| || ||||| | Sbjct 265502 AAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCT 265443 Query 192539 T 192539 | Sbjct 265442 T 265442 >seq2 Length=1335671 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || ||||| || | || | || || ||| || || ||||| Sbjct 5066 ACCACCTCTCAATCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 5007 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || |||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 5006 TAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 4947 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || | || ||||| || | || || ||||| || Sbjct 4946 AATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGAC 4887 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||| || |||||||| ||||| || | ||||||| || || ||||||||| Sbjct 4886 TTCAAGGGTAATGGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTTA 4835 >seq6 Length=817167 Score = 132 bits (146), Expect = 9e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || |||| |||| | | || ||||| ||||||||||||||||| ||||||||||| ||| Sbjct 642546 TCTGATAGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCA 642487 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 ||||| || ||||| || || || || || | ||| ||||| || | |||||||| Sbjct 642486 GGTGGAATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGAC 642427 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || |||||||| || | ||| || | ||| |||||||| Sbjct 642426 TCCACCTCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| | | || || ||||| | || | ||||| || || || || | Sbjct 643129 TACCACCTCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYG 643070 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | | || || ||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 643069 AKAGCGTTCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTG 643010 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | || ||||| || || || || || | ||| || || Sbjct 643009 GAATACCTTCCTTGTCCTGAATCTTCTGTTTCACGTT 642973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 192397 CCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 || |||||||| ||||||||||| |||||||| || ||||| || || || || || | | Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724 Query 192457 TTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 || || || || | || || ||||| || || || || ||||| || || || | | Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664 Query 192517 GTTTTAATAAATATCTGCAT 192536 || |||| || |||||||| Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479533294950