Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq5 163 5e-35
seq2 154 3e-32
seq6 136 7e-27
>seq5
Length=831479
Score = 163 bits (180), Expect = 5e-35
Identities = 362/540 (67%), Gaps = 5/540 (1%)
Strand=Plus/Minus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
|||||||| || || ||| | ||||| || ||||| || || || |||| || ||
Sbjct 305283 TTTTGGTAATCGGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAGATGTTT 305224
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951
| ||| |||||||| |||||| || || || || || | | ||| | | | ||
Sbjct 305223 TCCATGAAATCAAAAGGATTTGTGACGTTGTATCTCTTGTCACA-ACCAAGAGAAACAAG 305165
Query 38952 AA-TCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010
|| ||| ||||| |||||||| |||||||| |||| || || |||||||| | |||
Sbjct 305164 AAGTCTGTCGGCAACAAATTCGACATATTGACACATCAAATCTTTGTTCATACCAAGTAA 305105
Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070
|| ||| | || || | | || || ||| ||||| ||||||| || || ||
Sbjct 305104 GTTGGCTGGAAGAGCGTCTGTGAAATATCTTTGTTCAATTTCAACAGCTTCTTCGATGAT 305045
Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130
| | | | | || | ||| || | ||| | ||| |||||| ||
Sbjct 305044 CTTGAGCACGATCTTGGAATCTGGGGTATTGTTCAAATGG---GAGAATAATAAACAAGC 304988
Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190
|||||| || ||||||||||| || || | || ||||| || ||| || || |||||
Sbjct 304987 AAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCTGG 304928
Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250
||| || ||||| ||||| | ||| || || || ||||| | || || || |||||
Sbjct 304927 CATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCAAACGATCCGGAGAAAAAGATACC 304868
Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCA 39310
|| ||| ||||| || | || |||| | || || | | || ||||| | |||||
Sbjct 304867 TTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAATGCATTTTCATCGCACATCCA 304808
Query 39311 ATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370
| |||||||| || || |||| ||| ||| | || || ||||| || || || |||||
Sbjct 304807 TCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATTGAATAA 304748
Score = 147 bits (162), Expect = 4e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|||||||||||||| | || || || || || | ||| | || || || || ||
Sbjct 265677 ATAATACCACCTCTTAATCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAG 265618
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| ||||| | || |||| || ||||| |||||||| || || ||||| |||||||||
Sbjct 265617 TCGGATAAGGTTCTACCGTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCA 265558
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || ||||| |||||||| || || | || || || || ||||| || |||
Sbjct 265557 GGTGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGAT 265498
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||||| ||| ||||| ||||||||||| || || | || || ||||| ||
Sbjct 265497 TCAACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTT 265442
>seq2
Length=1335671
Score = 154 bits (170), Expect = 3e-32
Identities = 178/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || ||||| || | || | || || || ||
Sbjct 5074 TTCTTACCACCACCTCTCAATCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTG 5015
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || ||||| | || |||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 5014 TAGTCAGATAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGG 4955
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|||||||| || ||||| || ||||| || || | || ||||| || || || ||
Sbjct 4954 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAA 4895
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073
||||| ||||| || |||||||| ||||| || | ||||||| ||| || |||||||||
Sbjct 4894 GATTCGACTTCAAGGGTAATGGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTTA 4835
>seq6
Length=817167
Score = 136 bits (150), Expect = 7e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
||||||| | || | |||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 642546 TCTGATAGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCA 642487
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || ||||| || || || || || | ||| ||||| || || ||||||||
Sbjct 642486 GGTGGAATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGAC 642427
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || || |||||||| || | ||| || | || ||||||||
Sbjct 642426 TCCACCTCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374
Score = 100 bits (110), Expect = 5e-16
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900
|||||||||| | || || || ||||| | || | ||||| ||| || || || |
Sbjct 643129 TACCACCTCTCAATCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYG 643070
Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960
| | | || | |||| || ||||| ||||| ||||| || |||||||||||||||||||
Sbjct 643069 AKAGCGTTCTTCCGTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTG 643010
Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997
| || ||||| || || || || || | ||| || ||
Sbjct 643009 GAATACCTTCCTTGTCCTGAATCTTCTGTTTCACGTT 642973
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 171930 CCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 171989
|| ||||| || |||||||||||||||||||| || ||||| || || || || || | |
Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724
Query 171990 TTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 172049
|| || || || || || || ||||| || || || || ||||| || || || | |
Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664
Query 172050 GTTTTAATGAATATCTGCAT 172069
|| |||| ||| ||||||||
Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905135581374600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |