Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 268 2e-66 seq1 127 5e-24 seq6 102 2e-16 seq3 102 2e-16 >seq4 Length=942658 Score = 268 bits (296), Expect = 2e-66 Identities = 486/706 (69%), Gaps = 9/706 (1%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||||||||||||||||||| | ||| | ||||||| | | | ||||| | || Sbjct 332802 ACTATTTTGGTTTCAAAACGTTGGAAAGATCTTATTTGTTGAGATTGAATGGTCAAATTG 332861 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | ||||| || || || | | ||||| ||||||||||||| ||||||| Sbjct 332862 CAGAAAGACCTCAGCATTTGATTATGAGAGTTGCTGTTGGTATTCATGGTGATGATATAC 332921 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 || || ||||||| ||| || || | ||||| | || |||||| |||| | Sbjct 332922 AAAGTGCTATTGAAACCTATAATCTAATGTCTAAAAGATACTTTACCCATGCTTCTCCAA 332981 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATT 110540 | | ||||| || || || || ||| || ||||||| |||||| | | || Sbjct 332982 CTTTGTTTAATGCTGGTACCCCAAGAAATCAAATGTCTTCTTG-TTTCTTAGTTGCTATG 333040 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | ||||||||||||||||||||||||||| | | ||| || |||||| ||||| || Sbjct 333041 CAAGATGATTCTATTGAAGGTATTTATGATACCTTAAAACAATGTGCTCTGATTTCCAAG 333100 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | |||| || |||||| | ||| |||| ||||| | || | || | |||| ||| Sbjct 333101 ACTGCTGGTGGTATTGGTTTACACATTCACAATATTAGATCGACCGGTTCTTATATTGCA 333160 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| | || | || | |||||||| | ||||| || ||| | || || Sbjct 333161 GGTACCAACGGTACATCCAACGGTATCATTCCAATGGTTAGAGTGTTTAACAATACCGCT 333220 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 | |||||| ||||||||||| || ||| ||| | |||||| | |||||||| || Sbjct 333221 AGATATGTCGATCAAGGTGGTAACAAAAGACCTGGTGCCTTTGCTTTATATCTCGAGCCA 333280 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| ||||||| || || || | || || | ||||| || || |||||| Sbjct 333281 TGGCACGCAGATATTTTAGACTTTATTGACATTAGAAAAAACCATGGTAAGGAAGAAATC 333340 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 |||||| | ||||| || |||| | |||||||| |||||||||||||| | ||| || Sbjct 333341 AGAGCAAGAGATTTGTTCCCTGCATTATGGATTTCTGATTTATTCATGAAGAGAGTTGAA 333400 Query 110898 GAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | ||| || | ||| ||||| | | || | | || ||| | |||||| | Sbjct 333401 AACAAT--CAAGAATGGACTCTTTTTTCACCAAGTGAAGCCCCAGGTTTGAGTGATGTTT 333458 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 |||| | || || ||||| | ||||||||||||||||||||||| Sbjct 333459 ATGGTGATGAATTCGAAGAATTATACGAAAAATATGAAAAAGAAGG 333504 >seq1 Length=3254712 Score = 127 bits (140), Expect = 5e-24 Identities = 326/485 (67%), Gaps = 14/485 (3%) Strand=Plus/Plus Query 279818 AAAGAACTGATCCATTTTTCTAATTATGAT-GTTCATCGTTCTATTCCTCATTTAATGGA 279876 |||||| | ||| ||||||| | ||| || || | ||||||||| | | ||||| Sbjct 677081 AAAGAATTAATCTTGTTTTCTATTGCCGATTGTGCAA-GATCTATTCCTTCTGTCATGGA 677139 Query 279877 TGGTTTGAAACC--TTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 |||||| ||||| |||| | | |||||| ||| |||| ||| | || ||| | Sbjct 677140 TGGTTTTAAACCAGTTCAAA--GAAAGATTTTATAYGCATGTTACAAGCGTAATTTGAGA 677197 Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994 | |||||| || |||| |||| ||||||| |||| |||||| |||||||||| || Sbjct 677198 GATGAAATTAAGGTGTCTCAATTAGAAGGTTATATTTCRGAACATACAGGTTATCAYCAT 677257 Query 279995 GGTGAAGCGTCTCTTCAAG-GTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAA 280053 ||||| ||||| || | | | ||| | ||| | || ||||||| | | | ||| || Sbjct 677258 GGTGACGCGTC-ATTGATGCAATCAATTATTGGTTTGGCTCAAGATTATGTTGGTTCTAA 677316 Query 280054 CAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGA 280113 || ||||| | | |||| ||||| |||||||||| | ||| ||| ||||| Sbjct 677317 TAATTTAAACATTTTGATACCACATGGTGGATTTGGTTCTAGAGCTCAAGGTGGTAAAGA 677376 Query 280114 TCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGAT--ATTAC-AAACAAGTTATT 280170 | || ||| | || || ||| || || || || || || ||| ||||| | Sbjct 677377 TGCTGCGGCTGCAAGATATATTTTTAC-TGAATTACA-ATCAATCACTAAAAAAGTTTTC 677434 Query 280171 TATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATTGAACC 280230 ||| || |||||| | | ||| | | | ||||||||| | | |||| || Sbjct 677435 AATC-CTTTGGATAATCCGTTATTGAATTATTTGCAGGATGATGAGCAAACCGTTGAGCC 677493 Query 280231 AACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATTGGAAC 280290 || ||| |||||||| | || |||||||| || |||||| | |||| || || || Sbjct 677494 TGAATGGTATACTCCAATTTTACCAATGATTCTAGTGAATGGTTGTGAAGGTATCGGTAC 677553 Query 280291 AGGTT 280295 |||| Sbjct 677554 TGGTT 677558 Score = 109 bits (120), Expect = 1e-18 Identities = 215/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| | || ||||| ||||| |||||| | ||||| || ||||||||||||| Sbjct 1710262 CATTTAATGGATGATGATCCTGTTCTATTCAATCGTCAACCTTCGTTGCATAAAATGTCC 1710203 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 |||||| ||| | ||| ||||| | | | || ||| || | ||| || || Sbjct 1710202 ATGATGTGTCACAGAGTTAAAGTTATGCCATACTCTACCTTTAGAATGAATCTATCTGTC 1710143 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | | || |||||||| ||||| ||||| |||||||||||| ||||||| || |||||| Sbjct 1710142 ACTTCTCCGTATAATGCTGATTTCGATGGTGATGAAATGAATTTGCATGTTCCACAATCA 1710083 Query 305489 AAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTCCT 305548 | | |||| ||||| | || || | ||| | || || || || || |||||| Sbjct 1710082 TATGAAACAAGAGCTGAACTTTCCCAACTTTGTGCCGTTCCATTACAGATTATATCTCCT 1710023 Query 305549 GCTAT-AAATGCTCCAATAATCGAATTTGTACAAGATATTTGTATTGGTTATTATCTA-A 305606 | || ||| || | || | |||| ||||||| || ||| | ||||| | | Sbjct 1710022 -CAATCCAATAAACCGGTTATGGGTATTGTGCAAGATACTT-TATGTGGTATTAGGAAGA 1709965 Query 305607 TGACATTAAAAGA 305619 ||||||||| ||| Sbjct 1709964 TGACATTAAGAGA 1709952 Score = 93.3 bits (102), Expect = 1e-13 Identities = 174/254 (69%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 167678 TCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCC 167737 || ||| |||||||| ||||| || || | ||| | || | || || || ||||| || Sbjct 2830059 TCTTTTACATTCATCATAAAATCCGTATTGTCTAGTAATTTGGGCGCACTCATGATTGCC 2830118 Query 167738 TCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGT 167797 |||||| | || | ||| | | | ||||| || || | || || || Sbjct 2830119 TCTTAAAATAAAAAAGTTCTCTGGATATTTGATTTTATAGCATAACAAAAGTAATATCGT 2830178 Query 167798 TTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTT 167857 |||||| |||| ||||||||||||||| ||||||||||||| ||| ||| Sbjct 2830179 TTCTAACGATTGTTTACCTCTATCAACATAGTCACCTAAAAATAAATAGTTA---GCAGC 2830235 Query 167858 TGAAGGATTATCTAGTTTTTTAAAAATATTC-AAT-AAATCACTAAATTGACCATGTAAA 167915 || |||| | | | ||| ||||| |||| ||| ||||| || | |||||||||| | Sbjct 2830236 TGGAGGA-AACCCACATTTAGAAAAA-ATTCTAATCAAATCGATATACTGACCATGTACA 2830293 Query 167916 TCACCTACAACCTT 167929 ||||| |||| ||| Sbjct 2830294 TCACCAACAATCTT 2830307 >seq6 Length=817167 Score = 102 bits (112), Expect = 2e-16 Identities = 136/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 305306 AGACAT-TTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAAT 305364 |||||| ||||| ||| |||| ||||| |||||||| ||||| || | || | | | Sbjct 433165 AGACATATTGAA-GACGGTGATATTGTTCTTTTCAATAGACAACCTTCTTTACACAGATT 433223 Query 305365 GTCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTA 305422 || || || | ||| | ||||| |||| || | || || |||| |||| | Sbjct 433224 ATCCATTTTGTCCCATTTTG-CAAAG-ATTAGACCTTGGAGAACCTTCAGATTGAATGAA 433281 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||| |||||| || |||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct 433282 TGTGTTTGTACTCCATATAATGCGGATTTTGATGGTGATGAAATGAATTTGCATGTCCCT 433341 Query 305483 CAA 305485 ||| Sbjct 433342 CAA 433344 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 305300 GTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCAT 305359 ||| ||||||| | || | || ||| |||||| | ||| | |||||| | ||||| Sbjct 791352 GTTTTCAGACACATTAAAAATAACGATGTGGTTCTYATGAATCGTCAACCAACTTTGCAT 791293 Query 305360 AAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACA---TTTCGATTA 305416 ||| ||| ||||||| ||| ||||| || ||| | ||| || | || ||||| Sbjct 791292 AAAGCGTCCATGATGGGTCACAAAGTTCGTGTTTTACCAGGAGAGAAAACTTTAAGATTA 791233 Query 305417 AATGTAAGTGCTTGTACGC---CTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || || |||| ||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 791232 CAT-TA--TGCTAATACCGGTGCTTATAATGCTGATTTTGATGGTGATGAAATGAATATG 791176 Query 305474 CATGTACCTCAA 305485 ||| | |||||| Sbjct 791175 CATTTCCCTCAA 791164 >seq3 Length=1238071 Score = 102 bits (112), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 110680 CTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTG 110739 |||| | ||||| |||| | ||| ||||| ||||||| |||||| | ||||| | Sbjct 367063 CTGGTTTGGTTCCTCTGTTGAAAGTATTCAATTCAACTGCAAGATATGTTGACCAAGGAG 367122 Query 110740 G---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTG 110796 | ||| ||| ||| | ||| ||| ||| | |||||||||||| | ||| | |||| Sbjct 367123 GAAATAAAAGACCTGGTGCTTTTTGTATATATTTAGAACCTTGGCATGCGGATGTTTTTG 367182 Query 110797 AATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 | || || | ||| | |||||||| || ||||| | ||| ||| | || ||||| Sbjct 367183 ATTTTTTGAATCTTAGAAAAAATCAYGGTGATGAAGCAAGAAGGGCAAGAGACCTATTTC 367242 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||| | ||||| | ||||| ||||||||| Sbjct 367243 TTGCACTATGGATACCCGATTTGTTCATGAAA 367274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812237376557