Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 123 6e-23 seq2 111 4e-19 seq4 84.2 5e-11 >seq5 Length=831479 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || |||||||| ||||| ||| |||||| || | Sbjct 265453 TTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCTGATACCAT 265512 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||||||||||| ||||| || ||||| || || ||| |||||| | Sbjct 265513 TGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGACCAACAAAGATT 265572 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||| || ||||| || ||||| || || || || |||| |||||| |||| || Sbjct 265573 GATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTACAACATCCAAAA 265632 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||||||||| | || |||||| Sbjct 265633 GGAATCCACTCTTCACTTGGTGTTGAGA 265660 >seq2 Length=1335671 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || | ||||| ||| ||| ||||| | || Sbjct 4854 AAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATCTTCCGACACCATTGACAAT 4913 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| ||||| || ||||| ||| || ||| |||||| | ||||| Sbjct 4914 GTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGATTAATCTTT 4973 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| || || || || | || |||||| |||| || || || Sbjct 4974 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTACAACATCCAAAAGGAATCC 5033 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || |||||| | || |||||| Sbjct 5034 ACCCTTCACTTAGTCTTGAGA 5054 >seq4 Length=942658 Score = 84.2 bits (92), Expect = 5e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| || | ||||| || |||| || | || || ||||||| || | Sbjct 333600 GCATCCTTATAAAGCATGAATGGTGTACCGGTTTCTGTCTGTGCTTCCAAAATAGAGTAC 333541 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || | || ||| || || | ||| | ||| |||| ||||||||||| ||| | || || Sbjct 333540 CATAATTTTTGAGCCTTGATGGTGGATCTACCTCTACCTTCTTTTTCATATTTTTCGTAT 333481 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCG-TCAAGACCGGGAGCTTCCTTCGGACAAAA 173285 | |||||||| || | || |||| || |||| ||| || ||||| | || |||| Sbjct 333480 AATTCTTCGAATTCATCACCATAAACATCACTCAA-ACCTGGGGCTTCACTTGGTGAAAA 333422 Query 173286 GAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 173345 ||| |||| | | || | | || || ||||||||||| | || ||| |||| | || Sbjct 333421 AAGAGTCCATTCTTGATTGTTTTCAACTCTCTTCATGAATAAATCAGAAATCCATAATGC 333362 Query 173346 GTAGAACAATTGCCTTGC 173363 |||||| | ||||| Sbjct 333361 AGGGAACAAATCTCTTGC 333344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820239743077