Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 241 1e-58 >seq5 Length=831479 Score = 241 bits (266), Expect = 1e-58 Identities = 419/601 (70%), Gaps = 14/601 (2%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | || ||||| |||| ||||| || ||||||||||||||||| || | Sbjct 304403 AGATTTGTGCTCTTCCCAATCAAATACCATGAAATCTGGCAAATGTACAAAAAGGCCGAA 304462 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGC 43815 ||||| || ||||| || |||||| |||| ||| |||| |||||| ||| | |||| | Sbjct 304463 GCGTCTTTCTGGACCGCCGAAGAAATTGACTTGTCTAAGGACTTA-CACGACTGGAA--C 304519 Query 43816 ATTA----AAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCG 43870 | | ||| | || |||| | ||| || | || ||||| ||||||||||| Sbjct 304520 AACAGACTAAATGATAACGAAAGATTTTTCATTACCAGAGTGTTGGCCTTTTTTGCTGCT 304579 Query 43871 AGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930 || || || ||||| |||||||||||| || || || || ||| | || Sbjct 304580 TCAGATGGTATTGTCAACGAAAATTTGGTTGAAAACTTCTCGGCTGAGGTGCAAATCCCT 304639 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| ||||| ||||| || ||||| || ||||| || |||||||||| ||| Sbjct 304640 GAAGCCAAGTGTTTCTATGGTTTCCAAATCATGATGGAAAACATCCATTCGGAAACATAC 304699 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 | |||| || || || |||| ||| | || | | || || ||||| Sbjct 304700 TCCTTATTGATTGACACCTATGTCAAGGATCCAAAGGAATCGGAATTCTTATTCAATGCC 304759 Query 44051 ATAGAAA-CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---A 44106 || |||| || | | || |||||| | || || ||||||||| | | |||||| | Sbjct 304760 ATTGAAAACATTCCATGT-ATTAAAGAAAAGGCCGACTGGGCCATGAGATGGATGTGCGA 304818 Query 44107 TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 | ||||| | || || ||| || | || || ||||| | ||| ||||| || || || Sbjct 304819 TGAAAATGCATTATTCGGTGAAAGATTAGTTGCCTTTGCCGCTGTTGAAGGTATCTTTTT 304878 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || ||||||||||| |||| || ||||| || ||| ||||||||||||| || ||||| Sbjct 304879 CTCCGGATCGTTTGCTTCCATTTTCTGGTTGAAAAAAAGAGGTTTGATGCCAGGTTTGAC 304938 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 ||||| || || ||||| | | |||||||| ||||| |||||||||||| || || Sbjct 304939 ATTTTCCAACGAATTAATTTGCAGAGATGAAGGTTTACACACCGATTTTGCTTGTTTATT 304998 Query 44287 A 44287 | Sbjct 304999 A 304999 Score = 172 bits (190), Expect = 4e-38 Identities = 454/683 (66%), Gaps = 24/683 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || || ||||| ||| || ||| | |||||||||| || | | Sbjct 673767 ATTGGTGGGCTGGATACCGAGTTCACTGCCATTTTTAGAAGAGCATTTGCCTCTAGAATC 673708 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGG-ATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| || ||| || ||| || || |||| ||| | ||||| || | || ||||| Sbjct 673707 TTTCCTCCAGGGGTAATTGAAAAAATGGGTATG-ACCCATGTCAAGGGTATGTTACTTTA 673649 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---C 19418 ||| || |||||| || || || |||||||| || || || |||| | | | | Sbjct 673648 TGGTCCCCCGGGTACAGGTAAGACCTTAATTGCAAGGCAAATTGGTAAGATGTTGAATGC 673589 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| | ||| |||||||| ||||| |||||||| || ||||| || ||| || Sbjct 673588 AAAGGAGCCT---AAAATTGTCAATGGGCCTGAAATTTTGTCCAAATACGTTGGTTCGTC 673532 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA-ACGTTTAGGGC 19537 ||||| ||| | || ||| || || || ||||| ||| | || | | | || Sbjct 673531 AGAAGAGAATATTCGTAATTTATTCAAGGATGCAGAAGACGAATACAAGAAGA--AAGGT 673474 Query 19538 GCAAAAGT--TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 | | || || ||||| || || || | |||||||| || | | | ||| ||||| Sbjct 673473 G-ATGCGTCGTCATTGCATATCATTATTTTCGATGAATTAGATTCTGTTTTTAAACAAAG 673415 Query 19596 AGGTTCT------GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 ||||||| | || || || || ||| | ||| || |||||| | || | || Sbjct 673414 AGGTTCTAGAGGCGATGGAACAGGTGTGGCTGATAATGTGGTGAATCAATTGCTAGCCAA 673355 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | || ||||| ||||| |||| ||||| || || ||||| ||||| || |||| || Sbjct 673354 AATGGATGGTGTCGACCAATTGAACAATATCTTGGTCATTGGAATGACCAACAGACGTGA 673295 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 ||||| || || |||||| || |||| ||| | || ||| | || |||||||| | || Sbjct 673294 TTTAATTGATAGTGCCTTACTAAGACCGGGTAGATTTGAAGTTCAGGTCGAAATTCATTT 673235 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT--ACATACATCAACCATGCGACAA 19827 ||| |||||| || | || ||||||| || || | | | | ||| ||| || || Sbjct 673234 ACCAGATGAAGAGGGCAGATTGCAAATTTTGAAAATTAAGACAAAGCAA--ATGAGAGAA 673177 Query 19828 AATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTAT 19887 || || | || ||| | || || ||||||| | |||||| ||||| |||| Sbjct 673176 AACAATGTCTTGAATAAGGACGTTGATCTAGCCAAGCTTGCAGAATTGACCAAGAACTTC 673117 Query 19888 AGCGGCGCAGAACTTGAGGGATT 19910 || || ||| ||||||| || Sbjct 673116 TCTGGTGCCGAAATTGAGGGTTT 673094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455820772185