Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 221 2e-52 seq5 105 8e-18 seq1 82.4 1e-10 >seq4 Length=942658 Score = 221 bits (244), Expect = 2e-52 Identities = 1040/1632 (64%), Gaps = 41/1632 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 || ||||| || ||||| | ||| | |||||| | || | |||||| || | || || Sbjct 334593 TAATACATACCAGTCTTCAATCCCTTCTTCCATCCATAGAAATGCATCGATGTCAGTTTA 334534 Query 110429 GACATCGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG-CGC 110485 ||| || || |||| |||| ||||||||||||| ||| |||||| || | | Sbjct 334533 CCCATGGTAGGGTTCTTTAGGTGAAT--GTTCATACTTTGAGATTGATCAATGTAGGCAC 334476 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 | | || | || |||||||| || | | ||| | |||||||||||||| ||| Sbjct 334475 CTCTGTCG-GCAGCCATATCGATAATAGACTTTTGCGAGATTTCCCAAACTGTCTTGTAG 334417 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | || |||||| || | ||| || | | | || || || || |||| ||| Sbjct 334416 ATATCCTTGATTTCTTGTGGAATGTTAGGCAAGTTTTGAATCGA----CCCGTTGTCAGA 334361 Query 110606 A----TGAGATCCTTCAT---ATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 | || | | |||||| ||| || ||| | || || | | ||| | | Sbjct 334360 AATAATGTGGTTCTTCATGGAATCGTT---CCATAATCCCATATCAACCAAGTCTCTCAA 334304 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 | || ||| ||||| |||||||| || | |||||| || || || | Sbjct 334303 CATGTAAGGGTTAACAATCTGGAACTCACCGGCTAAAACTCTTCTGGAATAAATATTAGA 334244 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||||||||||| |||||||| | |||||| ||||| | |||||||| |||||||| Sbjct 334243 GGTGTATGGTTCAAAACATTCATTGTAACCCAAAATTTGAGAAGTGGAGGCAGTTGGCAT 334184 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 |||||| | || | | ||| | | ||| || || |||||| | |||| Sbjct 334183 TGGTGCAACTAATAAAGAGTTTCTCAAACCAAACTTGGAAATCTTTTCCTTTAATCCATC 334124 Query 110839 CCAGTCGTAGTTGA-GCTTGGTTTCACCTT--CCCACATGTCAAACTGAAGCACCCCTTG 110895 ||| || | | | |||| ||| || |||||| ||||| || | | ||||| Sbjct 334123 CCAATCCCATAAGTCGGTTGGCTTC---TTACCCCACAAATCAAATTGTAATAAACCTTG 334067 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 || ||||| || || |||||||||| | ||| | ||| |||| ||| || Sbjct 334066 ACTTGCTGGAGAGCCTTCGTAGGTTTCATATGGACCGTCAACTTTGGCCAGCTCAATACT 334007 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 || |||| || ||||| || || |||||||| || | || | || | || | Sbjct 334006 AGCTTCCAATGAAGCGTGGTATATAGTTTCAAAAATTTGTATGTTTAGTTCTCTAGCCTG 333947 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 | |||||||||| | | ||| || || |||| || | ||||||||| || | Sbjct 333946 GGCAGAATCAAATGGCAATCTTAACATCATGAAGGCATCAGCTAAACCTTGAACCCCAAC 333887 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 | |||| ||||||| || ||| || || ||| || ||||| |||||| | ||||| Sbjct 333886 AGCAATTGGTCTGTTTCTCATGTTGGATCTTCTAGCTTCTTCAACCGGATAATAGTTTCT 333827 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 ||| |||| || | ||| |||| ||||| || || |||||||| | ||| ||| | Sbjct 333826 GTCGATGATCTTATTCAAATTCTTGGCAACAACTTTGGTTATTTCATGTAATTTCTCAAA 333767 Query 111196 ATCAAA--AGTGCGAGTCT-CTTCATTG---ACATACTTTGGAAGGGCGATTGATGCCAA 111249 | | | | |||| | | ||| | ||| | ||| | || | |||||| || Sbjct 333766 GTTATACCACGATGAGTTTTCATCACTTTCAACAAATGCTGGTAATGCAACTGATGCTAA 333707 Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 || |||||||| || || | ||| || | ||| || ||| | || || Sbjct 333706 GTTACAAACAGCAACTTCTTCTGGGGAAGAGTATTCAACAATCTCACAACACAGATTAGA 333647 Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369 | || ||| | ||||| |||| |||||| ||| ||||||| |||||||| || || Sbjct 333646 AGATTTGATCATACCCAAGTTCTGTTGGTTGGATTTCCTGTTGCATGCATCCTTATAAAG 333587 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGG 111428 |||| | || || || || || ||||||| || | ||||| | ||| || | | | Sbjct 333586 CATGAATGGTGTACCGGTTTCTGTCTGTGCTTCCAAAATAGAGTACCATAATTTTTGAGC 333527 Query 111429 CTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 || | | ||| | | | || || || || ||| ||| | |||| || | Sbjct 333526 CTTG-ATGGTGGATCTACCTCTACCTTCTTTTTCATATTTTTCGTATAATTCTTCGAATT 333468 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | ||||| | || | |||||| || | ||| | ||||||| ||||| Sbjct 333467 CATCACCATAAACATCACTCAAACCTGGGGCTTCACTTGGTGAAAAAAGAGTCCATTCTT 333408 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | | ||||| | ||||||||| | || | |||||| | | | || | ||||| Sbjct 333407 GATTGTTTTCAACTCTCTTCATGAATAAATCAGAAATCCATAATGCAGGGAACAAATCTC 333348 Query 111609 TA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 | | | || ||||| | ||| ||||| || | |||| || || | ||||| Sbjct 333347 TTGCTCTGATT-TCTTCCTTACCATGGTTTTTTCTAATGTCAATAAAGTCTAAAATATCT 333289 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATT 111723 |||||||||||||| ||||| | || | | || |||| | || | |||||| Sbjct 333288 GCGTGCCATGGCTCGAGATATAAAGCAAAGGCACCAGGTCTTTTGTTACC-ACCTTGATC 333230 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 ||||| | || || |||||| || | || ||||||||| ||||| | ||| ||| Sbjct 333229 GACATATCTAGCGGTATTGTTAAACACTCTAACCATTGGAATGATACCGTTGGATGTACC 333170 Query 111784 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 || || || |||| ||| | | ||| | || || ||||| | |||||||| Sbjct 333169 GTTGGTACCTGCAATATAAGAACCGGTCGATCTAATATTGTGAATGTGTAAACCAATACC 333110 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 ||||| ||| || || | ||||| | | | || |||| ||||| | || || Sbjct 333109 ACCAGCAGTCTTGGAAATCAGAGCACATTGTTTTAAGGTATCATAAATACCTTCAATAGA 333050 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 || || | | || | | ||| ||| ||||| || |||||| ||||||||||| Sbjct 333049 ATCATCTTGCATAGCAACTAAGAAACAAGAAGACATTTGATTTCTTGGGGTACCAGCATT 332990 Query 111964 GAAGAGGGTTGG 111975 || | ||||| Sbjct 332989 AAACAAAGTTGG 332978 >seq5 Length=831479 Score = 105 bits (116), Expect = 8e-18 Identities = 377/582 (65%), Gaps = 13/582 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| ||||||| | |||| | ||| || || || | |||| Sbjct 304989 GCAAAATCGGTGTGTAAACCTTCATCTCTGCAAATTAATTCGTTGGAAAATGTCAAACCT 304930 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| | || |||||||| |||| | ||| || || |||||||| ||||| Sbjct 304929 GGCATCAAACCTCTTTTTTTCAACCAGAAAATGGAAGCA-AACGATCCGGAGAAAAAGAT 304871 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 ||| || ||| ||||| |||| | | ||| |||| | | ||| |||| | Sbjct 304870 ACCTTCAACAGCGGCAAAGGCAACTAATCTTTCACCGAATAATGCA---TTTTCATCGCA 304814 Query 122838 C---CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | ||| |||| ||||| | ||||| | | ||||||||| | ||| ||||| | Sbjct 304813 CATCCATCTCATGGCCCAGTCGGCCTTTTCTTTAATACATGGAATGTTTTCAATGGCATT 304754 Query 122895 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 ||||| | | ||| | |||||| | || ||||||||||| || ||||| Sbjct 304753 GAATAAGAATTCCGATTCCTTTGGATCCTTGACATAGGTGTCAATCAATAAGGAGTATGT 304694 Query 122955 TTCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| ||| | ||| ||| || | ||| | | ||||| | ||||| | Sbjct 304693 TTCCGAATGGATGTTTTCCATCAT-GATTTGGAAACCATAGAAACACTTGGCTTCAGGGA 304635 Query 123014 TCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 123073 | || |||||| ||| || || | | | ||| || ||||| ||||| || ||| Sbjct 304634 TTTGCACCTCAGCCGAGAAGTTTTCAACCAAATTTTCGTTGACAATACCATCTGAAGCAG 304575 Query 123074 CAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAG---GGTCTTCC 123130 |||| || |||| | | ||||| |||| || ||||| || | | |||| Sbjct 304574 CAAAAAAGGCCAACACTCTGGTAATGAAAAATCTTTCGTTATCATTTAGTCTGTTGTTCC 304515 Query 123131 AGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCT 123190 |||||| | || || ||||| |||| |||||| || ||||| | || |||| Sbjct 304514 AGTCGTGTAAGTCCTTAGACAAGTCAATTTCTTCGGCGGTCCAGAAAGACGCTTCGGCCT 304455 Query 123191 TTTTATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGA 123232 |||| || | || ||||| || | || || | ||||||| Sbjct 304454 TTTTGTACATTTGCCAGATTTCATGGTATTTGATTGGGAAGA 304413 >seq1 Length=3254712 Score = 82.4 bits (90), Expect = 1e-10 Identities = 212/318 (67%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || | |||||| || | || | |||||| || ||||| || | Sbjct 1072593 AATCCATCCATTTCAACTAATAATTGGTTCAGGGTGTTTTCTCTTTCGTCATTACCTCCC 1072534 Query 11600 ATACCACCAGCACTGCGT-TG--CTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 || || | | | | | || ||| || | ||||| || ||||||| || ||||| Sbjct 1072533 ATTCCCTTACCTTTACCTCTGGACTTTCCGATTGCATCTATTTCATCAACAAAAACAATC 1072474 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 | || |||||| | ||| ||| || | ||| || || ||| |||||||||||| Sbjct 1072473 GAAGGAGCATTTTCTCTGGCAGTTTTGAACAAATCACGCACTCTTGATGCACCCACACCA 1072414 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACC 11775 |||||||| || ||||| | | |||| ||| | | ||||| || | |||||| Sbjct 1072413 ACAAACATTTCGACAAATTCGGAACCAGA-CACAGAGTAAAATGGAACTCCAGCTTCACC 1072355 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 ||| ||||| ||| | | || || || |||||||| ||| | || ||| || Sbjct 1072354 TGCGGTGGCTTTGGCTAATAATGTTTTACCAGTACCTGGTGGACCATTCAAAATGGCACC 1072295 Query 11836 TCGGGGGATCTTGGCACC 11853 || || || |||||||| Sbjct 1072294 TCTTGGAATTTTGGCACC 1072277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031709535200