Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2 150 2e-31
seq5 123 3e-23
seq6 111 2e-19
>seq2
Length=1335671
Score = 150 bits (166), Expect = 2e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
||| ||||||||| || || || || |||||||| ||||| ||||| ||||| || || |
Sbjct 4834 CTAAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAAT 4893
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
| || | ||||| ||| | ||| || || || |||||||| || ||||| || |
Sbjct 4894 CTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTG 4953
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||| || | |||| ||||||||||||||| | || || | | | ||| || | ||||
Sbjct 4954 ACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACT 5013
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| || |||||||||||||||| ||||| ||||||||
Sbjct 5014 ACAACATCCAAAAGGAATCCACCCTTCACTTAGTCTTG 5051
>seq5
Length=831479
Score = 123 bits (136), Expect = 3e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||||||||| | || || ||||| || ||| | || ||||| || |
Sbjct 265445 ATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 265504
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || | ||| || || || || ||||| || || || || |||||
Sbjct 265505 GATACCATTGACAACGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTGACCAA 265564
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | || || |||||||||||| | || || | | | ||| || | ||||| ||
Sbjct 265565 CAAAGATTGATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACCTTATCCGACTACAAC 265624
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
||||||||||||||||||||||
Sbjct 265625 ATCCAAAAGGAATCCACTCTTCA 265647
>seq6
Length=817167
Score = 111 bits (122), Expect = 2e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| ||||| || || ||||| || || ||||| |||||
Sbjct 642374 ATGCAGATCTTTGTCAAGACACTTACGGGTAAAACTATCACCCTAGAGGTGGAGTCGTCA 642433
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| |||| || |||||||||||||| || ||||| || |||||
Sbjct 642434 GACACCATTGACAATGTGAAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAA 642493
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551
||| | | || ||||||||||| ||
Sbjct 642494 CAGAGATTGATCTTTGCTGGTAAACA 642519
Score = 86.0 bits (94), Expect = 7e-12
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||||||||| || ||||| || ||||| ||| | | || ||||| ||||||
Sbjct 642985 AAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAGAGATTGATCTTTGCGGGTAAG 643044
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||| | ||||| | | || || | || || || | ||||| |||||||| || |||
Sbjct 643045 CAATTAGAGGACGGAAGAACGCTMTCRGAYTACAACATTCAAAAAGAATCCACACTCCAT 643104
Query 27610 CTAGTCTTG 27618
| || |||
Sbjct 643105 TTGGTGTTG 643113
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| ||||| |||||||| || || |||||||| || ||
Sbjct 641644 ATGCAGATTTTCGTTAAGACACTTACAGGCAAGACCATCACCCTTGAGGTGGAATCTTCG 641703
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || |||| || || ||||||||||| || ||||| || |||||
Sbjct 641704 GACACCATTGACAACGTGAAACAGAAGATCCAGGACAAGGAAGGTATTCCACCTGACCAA 641763
Query 27526 CAGCGTCTAATTTTTGCTGG 27545
||| | | || ||||| ||
Sbjct 641764 CAGAGATTGATCTTTGCGGG 641783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310136231440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |