Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq2 154 3e-32 seq6 134 3e-26 >seq5 Length=831479 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || ||||||||||| || || | | ||| || || ||||| | || Sbjct 265648 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGTTCTACCGTCTTCTAATTG 265589 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | |||||||||||| || | |||||||| || |||||||| Sbjct 265588 CTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTATCTTGGATCTT 265529 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| ||||| |||||| || | |||||| ||||| || || Sbjct 265528 TTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGT 265469 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| | ||||| || Sbjct 265468 TAAGGTCTTGACAAAAATTTGCATCTT 265442 >seq2 Length=1335671 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | |||||| ||||| || ||||||||||| || || | | ||| || || Sbjct 5054 TCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 4995 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || ||||| | | |||||||||||| |||| |||||||| Sbjct 4994 GTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4935 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||||| || || || || |||||||| || ||| || || || || || Sbjct 4934 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAGGGTAAT 4875 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| || || || || || || || | ||||||||| Sbjct 4874 GGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTTA 4835 >seq6 Length=817167 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || || ||||| ||||||| ||| || || || ||||| | | ||||||||||| ||| Sbjct 642540 AGCGTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 642481 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||||||||| ||||| |||||||| || || |||||||| || || ||| Sbjct 642480 ATACCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACC 642421 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| || ||||| ||||| | |||||| Sbjct 642420 TCTAGGGTGATAGTTTTACCCGTAAGTGTCTTGACAAAGATCTGCAT 642374 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | | ||||||||||| |||| |||||||||||||||||||| ||| Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || |||||||| || ||| ||||| || ||||| ||||| || || || Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644 Score = 111 bits (122), Expect = 4e-19 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| |||||||| ||||| || || | || || ||||| || || | ||| Sbjct 643103 TGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAKAGCGTTCTTCCGTCCTCTAATTGC 643044 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | ||||||||||| |||| |||||||||||||| ||||| Sbjct 643043 TTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGAATCTTC 642984 Query 211032 TGTTTCACGTTTTCGAT 211048 ||||||||||| || || Sbjct 642983 TGTTTCACGTTGTCAAT 642967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151450489505