Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 138 8e-28 seq6 87.8 1e-12 >seq2 Length=1335671 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||| ||||||||||||||||| || || || || || || || ||||| || || Sbjct 4835 TAAAATGCAAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGAATC 4894 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| | | || ||||| || ||||| |||||| | || || || Sbjct 4895 TTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACCTGA 4954 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| | ||||| ||||| || || ||| ||||||||| | || ||| || || Sbjct 4955 CCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGACTA 5014 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || ||||| | || ||||| || || ||| |||| || Sbjct 5015 CAACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGAGGTGG 5065 >seq6 Length=817167 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23689 AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCC 23748 ||||| || ||| ||||| |||||| | || || || |||||| | || || ||||| Sbjct 642979 AAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAGAGATTGATCTTTGCG 643038 Query 23749 GGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 || || ||| | || |||| | | || | || |||||||| |||||||| |||||| Sbjct 643039 GGTAAGCAATTAGAGGACGGAAGAACGCTMTCRGAYTACAACATTCAAAAAGAATCCACA 643098 Query 23809 TTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| || || || ||| |||| || Sbjct 643099 CTCCATTTGGTGTTGAGATTGAGAGGTGG 643127 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || || || || || || ||||| || || || || || || Sbjct 641644 ATGCAGATTTTCGTTAAGACACTTACAGGCAAGACCATCACCCTTGAGGTGGAATCTTCG 641703 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||||| || || ||||| |||||| | || || || ||| Sbjct 641704 GACACCATTGACAACGTGAAACAGAAGATCCAGGACAAGGAAGGTATTCCACCTGACCAA 641763 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||| | || || ||||| || Sbjct 641764 CAGAGATTGATCTTTGCGGG 641783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009447578796