Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01]
37 sequences; 10,714,862 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 1e-38
seq5 174 4e-38
seq6 118 3e-21
seq10 91.5 4e-13
>seq2
Length=1335671
Score = 176 bits (194), Expect = 1e-38
Identities = 171/220 (78%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| || |||||||| ||||||| ||||| || | || ||||| ||
Sbjct 5054 TCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 4995
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| ||||| ||||| | || ||||||||| || ||||||||||||||
Sbjct 4994 GTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4935
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||||||||| ||| || |||||||| || | ||| || || | || ||
Sbjct 4934 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAGGGTAAT 4875
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717
||||| || || | ||||| | ||| | ||||||||||
Sbjct 4874 GGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTTA 4835
>seq5
Length=831479
Score = 174 bits (192), Expect = 4e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| ||||||||||| ||||||| ||||| |||| || ||||| ||
Sbjct 265660 TCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGTTCTACC 265601
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||||| ||||| ||||||||||| | || ||||||||| || || |||||||||||
Sbjct 265600 GTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 265541
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||||||||| || || ||||| || || | ||| || ||||| |||||
Sbjct 265540 ATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAAAGTGAT 265481
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | || | |||||| ||
Sbjct 265480 GGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTT 265442
>seq6
Length=817167
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609
||||| || ||||| | ||| || ||||| ||||| | || |||||||| || ||||||
Sbjct 642537 GTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATA 642478
Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
||||||||||| || ||||| || |||||| || ||||||||||| | ||||| |||
Sbjct 642477 CCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACCTCT 642418
Query 225670 AACGTGATCGTCTTGCCCGT 225689
| ||||| || || |||||
Sbjct 642417 AGGGTGATAGTTTTACCCGT 642398
Score = 107 bits (118), Expect = 5e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||||| |||||||||||||| | ||||| || | | ||||| ||
Sbjct 643116 TCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAKAGCGTTCTTCC 643057
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|| |||| ||||| || || ||||| | || |||||||| || ||||||||||||||
Sbjct 643056 GTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTT 642997
Query 225618 GTCTTGGATCTTTTGCTTCAC 225638
||| || ||||| || |||||
Sbjct 642996 GTCCTGAATCTTCTGTTTCAC 642976
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| || ||||| | || |||||||| || ||||||||||||||||| |||||||| ||
Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| || |||||||| || | |||||| || | ||||| |||||||| || |
Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664
Query 225694 GTTTTTATGAACACTTGCAT 225713
|| || | ||| | |||||
Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644
>seq10
Length=220419
Score = 91.5 bits (100), Expect = 4e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||| |||||||| || ||||| || || || ||||||||||| ||||||||
Sbjct 188596 GAAAATTTGACCGTCAGTAATGGAAATAACGTTGGTTGGAATATAAGCAGAGACATCACC 188655
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| ||||| | || || || || |||| || ||||||||
Sbjct 188656 ACCTTGGGTTTCAATGACTGGCAAAGCGGTTAAAGAACCACCACC 188700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530634665678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |