Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq5 174 4e-38 seq6 118 3e-21 seq10 91.5 4e-13 >seq2 Length=1335671 Score = 176 bits (194), Expect = 1e-38 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || |||||||| ||||||| ||||| || | || ||||| || Sbjct 5054 TCTCAAGACTAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 4995 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 4994 GTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4935 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||||||||| ||| || |||||||| || | ||| || || | || || Sbjct 4934 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCAAGGGTAAT 4875 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| || || | ||||| | ||| | |||||||||| Sbjct 4874 GGTCTTACCGGTAAGGGTTTTAACGAAAATTTGCATTTTA 4835 >seq5 Length=831479 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||||||||| ||||||| ||||| |||| || ||||| || Sbjct 265660 TCTCAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAGGTTCTACC 265601 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| ||||| ||||||||||| | || ||||||||| || || ||||||||||| Sbjct 265600 GTCTTCTAATTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 265541 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||||||| || || ||||| || || | ||| || ||||| ||||| Sbjct 265540 ATCTTGGATCTTTTGCTTGACGTTGTCAATGGTATCAGAAGATTCAACTTCTAAAGTGAT 265481 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | || | |||||| || Sbjct 265480 GGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTT 265442 >seq6 Length=817167 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||||| || ||||| | ||| || ||||| ||||| | || |||||||| || |||||| Sbjct 642537 GTTCTTCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATA 642478 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||||||||| || ||||| || |||||| || ||||||||||| | ||||| ||| Sbjct 642477 CCTTCCTTGTCCTGAATCTTCTGTTTCACATTGTCAATGGTGTCTGACGACTCCACCTCT 642418 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| || || ||||| Sbjct 642417 AGGGTGATAGTTTTACCCGT 642398 Score = 107 bits (118), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||||| |||||||||||||| | ||||| || | | ||||| || Sbjct 643116 TCTCAACACCAAATGGAGTGTGGATTCTTTTTGAATGTTGTARTCYGAKAGCGTTCTTCC 643057 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || |||| ||||| || || ||||| | || |||||||| || |||||||||||||| Sbjct 643056 GTCCTCTAATTGCTTACCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTT 642997 Query 225618 GTCTTGGATCTTTTGCTTCAC 225638 ||| || ||||| || ||||| Sbjct 642996 GTCCTGAATCTTCTGTTTCAC 642976 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| | || |||||||| || ||||||||||||||||| |||||||| || Sbjct 641783 CCCGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTCTGT 641724 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || |||||||| || | |||||| || | ||||| |||||||| || | Sbjct 641723 TTCACGTTGTCAATGGTGTCCGAAGATTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGT 641664 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 641663 GTCTTAACGAAAATCTGCAT 641644 >seq10 Length=220419 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||| |||||||| || ||||| || || || ||||||||||| |||||||| Sbjct 188596 GAAAATTTGACCGTCAGTAATGGAAATAACGTTGGTTGGAATATAAGCAGAGACATCACC 188655 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | || || || || |||| || |||||||| Sbjct 188656 ACCTTGGGTTTCAATGACTGGCAAAGCGGTTAAAGAACCACCACC 188700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530634665678