Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sorboxylosa_20[genbank_20GCA_5F001599115.1_202016-03-01] 37 sequences; 10,714,862 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 136 1e-26 seq6 125 2e-23 >seq2 Length=1335671 Score = 136 bits (150), Expect = 1e-26 Identities = 168/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||||| |||||||||| ||||| || || || || || || ||||| || || || Sbjct 4835 TAAAATGC---AAATTTTCGTTAAAACCCTTACCGGTAAGACCATTACCCTTGAAGTCGA 4891 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 | || |||||||| || || ||||| |||||||| || ||||| ||||| || || || Sbjct 4892 ATCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCACC 4951 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 ||||| ||| || | ||||| || || || || | ||||| || || || | | || Sbjct 4952 TGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGA 5011 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| ||||||| ||||| || || || | || |||||| | ||| Sbjct 5012 CTACAACATCCAAAAGGAATCCACCCTTCACTTAGTCTTGAGATTGAGA 5060 >seq6 Length=817167 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| |||||||| |||||||| |||||| Sbjct 642377 CAGATCTTTGTCAAGACACTTACGGGTAAAACTATCACCCTAGAGGTGGAGTCGTCAGAC 642436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||||| |||||||||||||| ||||| || || || ||||| || Sbjct 642437 ACCATTGACAATGTGAAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAG 642496 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || | ||||| || || |||||| | ||||| ||||| || || Sbjct 642497 AGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGAAGAACGCT 642540 Score = 107 bits (118), Expect = 5e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || ||||| ||||| |||||||||||||| ||||| || || || ||||| || || Sbjct 642967 ATTGACAACGTGAAACAGAAGATTCAGGACAAGGAAGGTATTCCACCTGACCAACAGAGA 643026 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||| || || || || | || || ||||| || || | || || ||| | ||| Sbjct 643027 TTGATCTTTGCGGGTAAGCAATTAGAGGACGGAAGAACGCTMTCRGAYTACAACATTCAA 643086 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| ||||| ||| | || |||||| | ||| Sbjct 643087 AAAGAATCCACACTCCATTTGGTGTTGAGATTGAGA 643122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730629356178