Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 >seq1 Length=2842153 Score = 113 bits (124), Expect = 5e-20 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 54047 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 ||||| ||||| ||||| ||| || | |||||||| || ||||| || || || Sbjct 1668696 TCAGGGATCCATAGAGC-ATAGAACATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTT 1668754 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 || || | |||||||| | ||||||| |||||| |||||||||||| || Sbjct 1668755 TTTCTTCATGTCGAGGAATTGTAAGATATCAGCATGCCATGGTTCCAAGTATGCACAGAT 1668814 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 ||||||| | | |||| ||||| ||||| | ||| |||| || |||| | |||| Sbjct 1668815 GGCTCCAGGTCTTCTGTTGCCTCCTTGATCAACGTACTTAGCCGTTGTATTGAACACTCG 1668874 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 || ||| || |||||| || |||| || || || ||||| ||||||||| || Sbjct 1668875 CAGCATCGGTGCAATACCGCTGCTCACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGC 1668934 Query 54286 ACGAATATTACTAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 ||||| ||||| || ||| | ||| || || |||| ||| ||||| | ||| || Sbjct 1668935 TCGAATGTTACTGATATGA-ACACCAATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 Score = 109 bits (120), Expect = 7e-19 Identities = 352/545 (65%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 || |||| ||||| || || | ||| |||| || | ||||| | ||||| || || Sbjct 870745 ATGTCAGCGTGCCATGGCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCT 870686 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | ||| | || ||||| || | || | | ||||||||| ||||| ||||| Sbjct 870685 TGGTCCACGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAA 870626 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 54310 | ||| ||||| |||| || || ||| ||||||| || || || | ||| Sbjct 870625 GTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCG 870566 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 || || || || | || ||||| | || || | || || ||||| ||||| || || Sbjct 870565 ATTCCACCGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCG 870506 Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 54430 || || ||| ||||| || | || || |||||||| |||| ||| || Sbjct 870505 ATGGAGTCCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCG 870446 Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 || || || | || || ||||||||||| || | || || | || ||||| ||| Sbjct 870445 GCGTTGAACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTC 870386 Query 54491 TCGATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 |||| || || | | ||| | || | || | || || | ||| | |||| Sbjct 870385 TCGAGGACTTTTTCAATGTTGTCCGA---GTGGACACCAATGGCAACTCTCATGATCATG 870329 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 ||||||||||| || | | || || | | |||| | ||| || |||| || Sbjct 870328 TGCTGAGGTCTCTCGGCAACTTTACCGTCGACTCTCAGAAGGTAAGAACGCTCCAGGGTC 870269 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTA 54667 || || ||||| |||||||| ||||| || ||||| | || | ||||| || | Sbjct 870268 TTGAATCCAAAGTAGTTGTACTGGAAGTCGCGATCGTAGTTGATGGCGGAGTTCAGGACA 870209 Query 54668 TCCTT 54672 ||||| Sbjct 870208 TCCTT 870204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721488677200