Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq3 113 4e-20 >seq4 Length=1514682 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || ||||||| || | ||||||||||| || ||||| ||||| | Sbjct 89140 CCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAA 89199 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | |||| |||| ||| || || ||| | ||||||||||||||||| || Sbjct 89200 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGA 89259 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || || | ||| ||| || || |||| | Sbjct 89260 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCACT 89319 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| || || || || ||||| || || ||||| Sbjct 89320 TCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| || || |||| || | ||||||||||| |||||||| ||||| | Sbjct 1333657 TTCCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 1333598 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | ||||||| ||||| || || || | ||||||||||||||||| | Sbjct 1333597 AAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAG 1333538 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| || || || | | | | || || | |||| Sbjct 1333537 GAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCA 1333478 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| | || ||||| || || ||||| Sbjct 1333477 CCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||||| |||| || | || ||||||||||| ||||| || || | Sbjct 89368 CCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAA 89427 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | ||||||| ||| || || ||| | ||||| | |||||||| || Sbjct 89428 AGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGG 89487 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||||||| || || | | | | || || || ||| Sbjct 89488 ATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACC 89547 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || | || ||||| || || ||||| Sbjct 89548 TCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594 >seq3 Length=1705961 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| || || |||| || | ||| |||||||| || ||||| ||||||| Sbjct 1462856 CCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1462797 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||| ||| || || || | ||||||||||||||||| || Sbjct 1462796 AGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGG 1462737 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || || | | | | || || | ||| Sbjct 1462736 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1462677 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| || ||||| ||||| | ||||| || || || ||||| |||| Sbjct 1462676 TCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTTGA 1462625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259122805740