Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 255 6e-63 seq3 123 3e-23 >seq4 Length=1514682 Score = 255 bits (282), Expect = 6e-63 Identities = 421/603 (70%), Gaps = 7/603 (1%) Strand=Plus/Minus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 |||||| || || ||||| || | ||| ||||| ||| |||||||| |||||||| Sbjct 729301 CCGGTTTGTCATGTTCCCTATCAAGTACAGCGACATCTGGGAGATGTACAAGAAGGCCGA 729242 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCG 116721 ||| || ||||||||| ||||||| | ||| |||| ||||| || ||||||| | Sbjct 729241 GGCCTCTTTCTGGACCACCGAGGAGATCGACTTGTCTAAGGATCTGATCGACTGGAACAC 729182 Query 116722 C---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778 | ||||||| ||||||| | | |||||| || ||||| || || |||||||| Sbjct 729181 CAAGTTGAACGCCAACGAGAGATACTTCATCTCGCGTGTGCTCGCATTCTTCGCCGCTTC 729122 Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 |||||| |||||| ||||||| || | || ||| || ||||| ||| || | || Sbjct 729121 CGACGGTATCGTCGACGAGAACTTGTGCCAGAACTTCACTACTGAGGTTCAGATGCCAGA 729062 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 ||| || |||||||||||| |||||| |||||||| | ||||| || | || || Sbjct 729061 GGCCCGTGCCTTCTACGGCTTCCAGATCATGGTGGAGAACATCCACTCCGAGACTTACTC 729002 Query 116899 GACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGC--TCCGTTTGTTGAACGCC 116956 || |||||||| ||| | | | | | | | || || | ||||| | ||| Sbjct 729001 CGTGCTGATCGACACCTACAT-CAC-CGACAAAAGCGAGGCCAACTACTTGTTTGAGGCC 728944 Query 116957 ATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC 117016 ||||||| || || |||| ||||||||| ||||| | | ||||| | | Sbjct 728943 ATCGAGAACATCCCACCTATCAAGGAGAAGGCCCTCTGGGCCGTCAGATGGATGGAGAAC 728884 Query 117017 AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT 117076 | || ||| | || ||||| ||| | |||| ||| ||| |||| || ||||||| Sbjct 728883 AAGGACGCCCTTTACGCTGAGCGTCTGATCGCCTACGCTGCCATCGAAGGTATCTTCTTC 728824 Query 117077 TCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACT 117136 || || ||||| | || || ||||||||||| | || |||||||| || || || Sbjct 728823 TCAGGATCGTTCGCTTCGATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCAGGTCTCACC 728764 Query 117137 TTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTG 117196 ||| |||||||||||||| ||| || ||||| |||| |||||| ||||| || || Sbjct 728763 TTCTCCAACGAGCTCATCTGCAGAGATGAGGGCTTGCACACCGACTTCGCCTGCTTACTC 728704 Query 117197 TTC 117199 ||| Sbjct 728703 TTC 728701 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || |||||||| |||| || || || | Sbjct 89594 ATGCAGATCTTCGTCAAGACCCTCACAGGTAAGACCATCACACTCGAGGTTGAGTCCTCA 89535 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| |||| || | || || || || ||||| | ||||| Sbjct 89534 GACACCATTGACAACG-TCAAGCAAAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 89476 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||| |||| || | | ||||| ||| ||||| Sbjct 89475 GCAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCCGATTACAA 89416 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | ||||| || Sbjct 89415 CATCCAAAAGGAGTCTACGCTCCA 89392 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| || || | || Sbjct 1333429 ATGCAGATTTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1333488 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| || || | ||||| Sbjct 1333489 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGAATTCCTCCAGACCA 1333547 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| || || ||||| || |||| | || || |||||||| Sbjct 1333548 GCAGAGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAA 1333607 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||| || || Sbjct 1333608 CATTCAGAAGGAGTCCACCCTCCA 1333631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || || || || || Sbjct 89366 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 89307 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | || || | || || |||||||| || | ||||| Sbjct 89306 GACACTATCGATAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 89248 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || || || ||| |||| |||| | ||||| |||||||| Sbjct 89247 GCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTTTCAGACTACAA 89188 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 89187 CATCCAGAAGGAGTCCACCCTCCA 89164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || || || || || Sbjct 88910 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 88851 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | || || || || ||||| | ||||| Sbjct 88850 GACACCATCGATAACG-TCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 88792 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || ||| |||| || | | ||||| |||||||| Sbjct 88791 GCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAA 88732 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 88731 CATCCAGAAGGA 88720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| |||| |||||| | | Sbjct 89138 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACGCTCGAGGTCGAATCTTCG 89079 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| | || || | || || || || ||||| | |||||| Sbjct 89078 GACACCATTGACAATGTCAAGCAGAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAG 89019 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||| |||| || | || ||||| ||||||||| Sbjct 89018 CAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGGACCCTTTCTGACTACAAC 88959 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| || |||| || || Sbjct 88958 ATTCAGAAAGAATCCACTCTCCA 88936 >seq3 Length=1705961 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || || || || || |||||| |||| || || | Sbjct 1462627 AAGATGCAGATTTTCGTTAAAACCCTTACCGGAAAGACGATCACCCTCGAGGTTGAGTCT 1462686 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| | || || | ||||| ||||| ||||| | || Sbjct 1462687 TCCGACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCACCTGA 1462745 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||| |||| ||| || || ||| |||| |||| || ||||| ||||| Sbjct 1462746 CCAGCAGAGACTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTTCGGACTA 1462805 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 1462806 CAACATCCAGAAGGAGTCGACTCTCCA 1462832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219103396400