Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=2842153 Score = 123 bits (136), Expect = 3e-23 Identities = 339/518 (65%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 || |||| ||||| || || | ||| ||||| || | ||||| | ||||| || || Sbjct 870745 ATGTCAGCGTGCCATGGCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCT 870686 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | ||| | || ||||| || | || | | ||||||||| |||||||| || Sbjct 870685 TGGTCCACGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAA 870626 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCT 63548 |||| |||||||||| || || ||| ||||||| || || || | ||| Sbjct 870625 GTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCG 870566 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 ||||| || || | || ||||| | || || | || || || || ||||| ||||| Sbjct 870565 ATTCCACCGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCG 870506 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 ||| || || ||||| || | || || |||||||| |||| | ||| || Sbjct 870505 ATGGAGTCCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCG 870446 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 || || || | || || ||||||||||| || | || || | || ||||| ||| Sbjct 870445 GCGTTGAACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTC 870386 Query 63729 TCAATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || | || || | | ||| | || | || | || || | ||| | |||| Sbjct 870385 TCGAGGACTTTTTCAATGTTGTCCGA---GTGGACACCAATGGCAACTCTCATGATCATG 870329 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 ||||||||||| || ||| ||| || | | ||| | ||| || |||| || Sbjct 870328 TGCTGAGGTCTCTCGGCAACTTTACCGTCGACTCTCAGAAGGTAAGAACGCTCCAGGGTC 870269 Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 || || ||||| |||||||| ||||| || ||||| Sbjct 870268 TTGAATCCAAAGTAGTTGTACTGGAAGTCGCGATCGTA 870231 Score = 109 bits (120), Expect = 7e-19 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 63285 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 ||||| ||||| ||||| ||| || | |||||| | || ||||| || || || Sbjct 1668696 TCAGGGATCCATAGAGC-ATAGAACATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTT 1668754 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 || || | |||||||| | ||||||| |||||| |||||||||||| || Sbjct 1668755 TTTCTTCATGTCGAGGAATTGTAAGATATCAGCATGCCATGGTTCCAAGTATGCACAGAT 1668814 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 ||||||| | | |||| ||||| ||||| | ||| |||| || |||| | |||| Sbjct 1668815 GGCTCCAGGTCTTCTGTTGCCTCCTTGATCAACGTACTTAGCCGTTGTATTGAACACTCG 1668874 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 || ||| || ||||||| | | ||| || || || ||||| |||| |||| || Sbjct 1668875 CAGCATCGGTGCAATACCGCTGCTCACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGC 1668934 Query 63524 ACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 ||||| ||||| || ||| | ||| ||||| |||| ||| ||||| | ||| || Sbjct 1668935 TCGAATGTTACTGATATGA-ACACCAATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817481909200