Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 >seq1 Length=2842153 Score = 125 bits (138), Expect = 1e-23 Identities = 420/649 (65%), Gaps = 10/649 (2%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || ||||| ||||| ||||||||||| || ||| || | || | || | | Sbjct 870847 ACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCTGGGAACAAGTCACGGGCACGGATC 870788 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGAT--CGAGGAACGCCATAATATCAGAATGCCACG 80056 ||||| || || || | |||| ||| || || | | || |||| ||||| | Sbjct 870787 TCCTCCTTACC-GTGGT-TTTTACGGATGTCGGTGAGGTCGAAGATGTCAGCGTGCCATG 870730 Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAG 80116 | || | ||| ||||| || | || |||| ||||| || || || || | ||| | | Sbjct 870729 GCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCTTGGTCCACGTAACGGG 870670 Query 80117 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 80176 | ||||| || | || | | ||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 870669 CCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAAGTACCGTTGGTACCGG 870610 Query 80177 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 80236 || || ||| ||||||| || || || | ||| ||||| || || | | Sbjct 870609 CAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCGATTCCACCGGCGGTCT 870550 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 | ||||| | || || | || || ||||| ||||| || || ||| || || ||| Sbjct 870549 TGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCCTCCTTCA 870490 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 || || | || || |||||||| |||| ||| || || || || | || | Sbjct 870489 TGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCGGCGTTGAACAGAGTTG 870430 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 | ||||||||||| || | || |||| || ||||| ||||| | || ||| | Sbjct 870429 GCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTCTCGAGGACTTTTTCAA 870370 Query 80417 ---TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 80473 | ||| | || | || | || || | ||| | ||||||||||||||| || Sbjct 870369 TGTTGTCCGA---GTGGACACCAATGGCAACTCTCATGATCATGTGCTGAGGTCTCTCGG 870313 Query 80474 CGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 | | || | | | ||| | |||||| |||| || || || ||||| |||| Sbjct 870312 CAACTTTACCGTCGACTCTCAGAAGGTAAGAACGCTCCAGGGTCTTGAATCCAAAGTAGT 870253 Query 80534 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 |||| ||||| || ||||| | || | ||||| || |||||| Sbjct 870252 TGTACTGGAAGTCGCGATCGTAGTTGATGGCGGAGTTCAGGACATCCTT 870204 Score = 113 bits (124), Expect = 6e-20 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 79957 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 ||||| ||||| ||||| ||| || | |||||||| || ||||| || || || Sbjct 1668696 TCAGGGATCCATAGAGC-ATAGAACATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTT 1668754 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 || || | |||||||| | ||||||| |||||| |||||||||||| || Sbjct 1668755 TTTCTTCATGTCGAGGAATTGTAAGATATCAGCATGCCATGGTTCCAAGTATGCACAGAT 1668814 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 |||| |||| | |||| ||||| ||||| | ||| |||| || |||| | |||| Sbjct 1668815 GGCTCCAGGTCTTCTGTTGCCTCCTTGATCAACGTACTTAGCCGTTGTATTGAACACTCG 1668874 Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 || ||| || |||||| || ||| || || || ||||| ||||||||| || Sbjct 1668875 CAGCATCGGTGCAATACCGCTGCTCACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGC 1668934 Query 80196 ACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 ||||| ||||| || ||| | ||| ||||| |||| ||| ||||| | ||| || Sbjct 1668935 TCGAATGTTACTGATATGA-ACACCAATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268665324600