Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 109 7e-19 seq4 96.9 5e-15 >seq1 Length=2842153 Score = 109 bits (120), Expect = 7e-19 Identities = 306/466 (66%), Gaps = 4/466 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || ||||| ||||| ||||||||||| || ||| || | || | || | | Sbjct 870847 ACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCTGGGAACAAGTCACGGGCACGGATC 870788 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGAT--CGAGGAACGCCATAATATCAGAATGCCACG 72139 ||||| || || || | |||| ||| || || | | || |||| ||||| | Sbjct 870787 TCCTCCTTACC-GTGGT-TTTTACGGATGTCGGTGAGGTCGAAGATGTCAGCGTGCCATG 870730 Query 72140 GTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 72199 | || | ||| ||||| || | || || | ||||| || || || || | ||| | | Sbjct 870729 GCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCTTGGTCCACGTAACGGG 870670 Query 72200 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 72259 | ||||| || | || | | ||||||||| ||||| ||||| | ||| ||||| |||| Sbjct 870669 CCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAAGTACCGTTGGTACCGG 870610 Query 72260 AGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 || || ||| ||||||| || ||| || | ||| ||||| || || | | Sbjct 870609 CAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCGATTCCACCGGCGGTCT 870550 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | ||||| | || || | || || ||||| ||||| || || || || ||| ||| Sbjct 870549 TGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCCTCCTTCA 870490 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 || || | || || |||||||| |||| ||| || || || || | || | Sbjct 870489 TGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCGGCGTTGAACAGAGTTG 870430 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 | ||||||||||| || | || |||| || ||||| ||||| Sbjct 870429 GCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTCTC 870384 Score = 109 bits (120), Expect = 7e-19 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 72040 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098 ||||| ||||| ||||| ||| || | |||||||| || ||||| || || || Sbjct 1668696 TCAGGGATCCATAGAGC-ATAGAACATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTT 1668754 Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 || || | |||||||| | ||||||| |||||| |||||||||||| || Sbjct 1668755 TTTCTTCATGTCGAGGAATTGTAAGATATCAGCATGCCATGGTTCCAAGTATGCACAGAT 1668814 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 |||| || | | |||| ||||| ||||| | ||| |||| || |||| | |||| Sbjct 1668815 GGCTCCAGGTCTTCTGTTGCCTCCTTGATCAACGTACTTAGCCGTTGTATTGAACACTCG 1668874 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 || ||| || |||||| || |||| || || || ||||| ||||||||| || Sbjct 1668875 CAGCATCGGTGCAATACCGCTGCTCACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGC 1668934 Query 72279 ACGAATATTGCTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 ||||| || || || ||| | ||| ||||| |||| ||| ||||| | ||| || Sbjct 1668935 TCGAATGTTACTGATATGA-ACACCAATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 >seq4 Length=1514682 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || ||||| ||| ||||| ||||||||||| | || | |||||||| || ||| Sbjct 728708 AAGCAGGCGAAGTCGGTGTGCAAGCCCTCATCTCTGCAGATGAGCTCGTTGGAGAAGGTG 728767 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || ||||| || || | ||| || ||||| || || || || || ||||| || ||| Sbjct 728768 AGACCTGGCATGAGACCTCTCTTCTTGAGCCAGAAGATCGAAGCGAACGATCCTGAGAAG 728827 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 ||||| ||||| | || || |||| || || | ||| Sbjct 728828 AAGATACCTTCGATGGCAGCGTAGGCGATCAGACGCTC 728865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139074161400