Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 6e-14 seq5 84.2 3e-11 >seq4 Length=1514682 Score = 93.3 bits (102), Expect = 6e-14 Identities = 246/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 69905 ACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATGATTTCCGGA 69964 ||||| || | || ||| ||||||| || | | || || ||||| | | || || Sbjct 616585 ACGACGAAAAGGGTGTTTTTCAAGGGAATCTTGAAAGAACTGCTGTGGTTTGTGTCTGGT 616526 Query 69965 TCGACCAATGCCAAAGAGCTGAGCCGAA-AGGGTGTACACATTTGGAGCGGCAACAGTAG 70023 | || | | || ||||| |||||| |||| || || || ||| |||||| || Sbjct 616525 TGCACTGACGGTAACAAGCTG-GCCGAACAGGGCGTTCATATCTGGGACGGCAATGGTTC 616467 Query 70024 TCGAAGCGT-TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAG 70082 | || | || |||||| || | || |||||||||||| || |||||| |||| || | Sbjct 616466 TAGA-GAGTATTTGGACTCTTTGGGACTCACCGACAGACGCGAAGGCGATTTGGGTCCCG 616408 Query 70083 TGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATT 70142 | || || ||||| ||| | || | ||| || | || || || || || || || || Sbjct 616407 TTTATGGGTTCCAATGGCGTCATTTCGGCGCCGAATACGTCGATTGTGACACCGATTACA 616348 Query 70143 CGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACA 70201 | || |||| |||||| ||||| ||| |||| | || ||||||||||| ||| Sbjct 616347 CTGGCAAGGGCTATGATCAGATTGCTAACA-TCATCCATACACTCAAGACCAACCCATAC 616289 Query 70202 GATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCA 70261 || | ||||| | | | | |||||||| | | ||| | | ||||| || ||| Sbjct 616288 GACCGCCGGATCCTTCTCTCTGCTTGGAATCCGCCCGCTTTCAAAGAGATGGCTCTGCCA 616229 Query 70262 CCGTGTCA 70269 || || || Sbjct 616228 CCTTGCCA 616221 >seq5 Length=294752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||||| ||||| | | ||| || |||||||||| ||||||||| |||||||| Sbjct 281051 TTTACGGTAGAAGATCATGGCCCCTCTTGGGCCTCTGAGAGACTTGTGCGTGGTAGTGGT 281110 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 |||||||||| ||||| || || | || || || | | ||||| | || | || Sbjct 281111 CACAATGTCAGCGTACTCGAAAGGACTTGGGATCACACCGGCAGCAATGAGACCAGAGAT 281170 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATC 127266 ||| || ||||| |||||| | | ||| || | || |||||| Sbjct 281171 GTGAGCCATATCCACCATCAAGTATGCACCGACTTCGTCAGCAATC 281216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059061051400