Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 >seq1 Length=2842153 Score = 120 bits (132), Expect = 4e-22 Identities = 377/573 (66%), Gaps = 22/573 (4%) Strand=Plus/Plus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 |||| || ||||| || || | ||| || || ||| || |||||||| ||||| | Sbjct 1668430 ACTTAATGGTTCCCAAGTTCTTTTGGTTCGATTTCCGGTTGCATGCATCCTTGTAAAGCA 1668489 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC------GACTC 63081 ||||||||||||| || || |||| || | || |||| | ||| || | | | Sbjct 1668490 TGAATGGAGTACCTGTCTCTGTCTGCGAGTATAGAATCTTCTCCCACACTTTCCTGGCAC 1668549 Query 63082 GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGA 63141 || | | || || || | ||||| || |||||| | |||| | |||| Sbjct 1668550 GAACTGT----ATCCATCTGAAG-TCCTT-CTGCCTCGTATTTTTGGTACAGTGCATCGA 1668603 Query 63142 ACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATT--CATCCGGACACATCAACGACC 63198 | || || || | |||| ||||||||| || | | |||| | ||| | | Sbjct 1668604 ATTCCTCCCCATACACATCAGACAATCCAGGTGCAGTATCTTCCGAAAACAGGCTC---C 1668660 Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AAT 63257 | ||| ||| | | || || ||| || | ||||| ||||| ||||| ||| || Sbjct 1668661 AGTCTTGGTCGGCTTCAACACGACGCATGAACAAGTCAGGGATCCATAGAGC-ATAGAAC 1668719 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 | |||||||| || ||||| || || || || || | |||||||| | Sbjct 1668720 ATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTTTTTCTTCATGTCGAGGAATTGTAAG 1668779 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||||| |||||| |||||||||||| || ||||||| | | |||| ||||| Sbjct 1668780 ATATCAGCATGCCATGGTTCCAAGTATGCACAGATGGCTCCAGGTCTTCTGTTGCCTCCT 1668839 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | ||| |||| || |||| | |||| || ||| || ||||||| | Sbjct 1668840 TGATCAACGTACTTAGCCGTTGTATTGAACACTCGCAGCATCGGTGCAATACCGCTGCTC 1668899 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACC 63496 | ||| || || || ||||| ||||||||| || ||||| ||||| || ||| | ||| Sbjct 1668900 ACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGCTCGAATGTTACTGATATGA-ACACC 1668958 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 ||||| |||| ||| ||||| | ||| || Sbjct 1668959 AATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 Score = 114 bits (126), Expect = 2e-20 Identities = 353/545 (65%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 || |||| ||||| || || | ||| ||||| || | ||||| | ||||| || || Sbjct 870745 ATGTCAGCGTGCCATGGCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCT 870686 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | ||| | || ||||| || | || | | ||||||||| |||||||| || Sbjct 870685 TGGTCCACGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAA 870626 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 |||| |||||||||| || || ||| ||||||| || || || | ||| Sbjct 870625 GTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCG 870566 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 ||||| || || | || ||||| | || || | || || || || |||||||| || Sbjct 870565 ATTCCACCGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCG 870506 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||| || || ||||| || | || || |||||||| |||| ||| || Sbjct 870505 ATGGAGTCCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCG 870446 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || || || | || || ||||||||||| || | || || | || ||||| ||| Sbjct 870445 GCGTTGAACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTC 870386 Query 63678 TCAATAGCTGAGTCTA---TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 || | || || | | ||| | || | || | || || | ||| | |||| Sbjct 870385 TCGAGGACTTTTTCAATGTTGTCCGA---GTGGACACCAATGGCAACTCTCATGATCATG 870329 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||||||||| || | | || || | | ||| | ||| || |||| || Sbjct 870328 TGCTGAGGTCTCTCGGCAACTTTACCGTCGACTCTCAGAAGGTAAGAACGCTCCAGGGTC 870269 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 || || ||||| |||||||| ||||| || ||||| | || | ||||| || | Sbjct 870268 TTGAATCCAAAGTAGTTGTACTGGAAGTCGCGATCGTAGTTGATGGCGGAGTTCAGGACA 870209 Query 63855 TCCTT 63859 ||||| Sbjct 870208 TCCTT 870204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947083197400