Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 3e-21
seq3 111 1e-19
>seq4
Length=1514682
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || || || |||| || || ||||||||||| || ||||||||||| |
Sbjct 1333655 CCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 1333596
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || ||||||| | || || || || | ||||| | ||| ||||| |||
Sbjct 1333595 AGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGA 1333536
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| || | |||||| || | | | | |||||| | ||||
Sbjct 1333535 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 1333476
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || |||||||| || ||||| |||||||||||
Sbjct 1333475 TCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || || || |||| || || ||||||||||| || ||||||||||| |
Sbjct 89140 CCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAA 89199
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| || |||| ||||| || || || ||| | ||||| | ||| ||||| ||
Sbjct 89200 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGA 89259
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| || || || | |||||| || | | | ||||||| || |||| |
Sbjct 89260 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCACT 89319
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || || || |||| || ||||| || ||||||||
Sbjct 89320 TCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780
|| || |||| || ||||| ||||||||||| |||||||| |||| | |||| || |
Sbjct 89380 CTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCA 89439
Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840
|||||||| || || || ||| | ||||| || || ||||| || | || || ||
Sbjct 89440 TCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTA 89499
Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || | ||||| || | | | | ||||| || ||| || | ||||||
Sbjct 89500 TCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATG 89559
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || || || || ||||| || ||||||||
Sbjct 89560 GTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || || || |||| || || || || ||||| || ||||||||||| |
Sbjct 88684 CCGCCTCTAAGTCTAAGGACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAA 88743
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| || | |||||||| || || || || | ||||| || || ||||| ||
Sbjct 88744 AGGGTTCTGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGG 88803
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || || || || | |||||| || | | | |||||| || |||| |
Sbjct 88804 ATACCTTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACT 88863
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || || || |||| || ||||| || ||||||||
Sbjct 88864 TCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 88910
>seq3
Length=1705961
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || ||||| |||| || || || |||||||| || ||||||||||| |
Sbjct 1462856 CCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1462797
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||||||||| || || || || | ||||| | ||| ||||| ||
Sbjct 1462796 AGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGG 1462737
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| || | |||||| || | | | | |||||| | |||
Sbjct 1462736 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1462677
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || |||||||| || ||||| || ||||||||||| |||
Sbjct 1462676 TCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTTG 1462626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087925944850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |