Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8 122 6e-23 seq7 122 6e-23 seq4 100 2e-16 >seq8 Length=5675 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||||| ||||| || |||||| | Sbjct 4859 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 4800 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4799 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4765 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||| |||| ||||||||| |||||||||||| | Sbjct 3005 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGGTCTCTC 2946 Query 20007 GGTAATATTTAGCC 20020 | | |||||||||| Sbjct 2945 GCTGATATTTAGCC 2932 >seq7 Length=6709 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||||| ||||| || |||||| | Sbjct 1519 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 1578 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1579 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||| |||| ||||||||| |||||||||||| | Sbjct 3373 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGGTCTCTC 3432 Query 20007 GGTAATATTTAGCC 20020 | | |||||||||| Sbjct 3433 GCTGATATTTAGCC 3446 >seq4 Length=1514682 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || || || ||||||||| || |||||||| | Sbjct 89366 TACCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGG 89425 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || || || || || |||||||| || || ||||| || || | | Sbjct 89426 AAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTG 89485 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || ||| || |||||||| || || | | || ||| |||| Sbjct 89486 GGATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAA 89545 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | ||| || || ||||| || | ||| || ||||| ||||||||| |||| Sbjct 89546 CCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCATGATTTA 89600 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || |||||| || || ||||| ||||| |||| Sbjct 88910 TACCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAG 88969 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || || || || |||||||| || || ||||| || || | | Sbjct 88970 AAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTG 89029 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || || || ||||| ||||| | | || || | ||| | Sbjct 89030 GGATACCTTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGATTCGA 89089 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || ||||| ||||| || | || || ||||| |||||||| Sbjct 89090 CCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947138767465