Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 >seq4 Length=1514682 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| | ||||| | ||||||||||| || Sbjct 89366 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 89307 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || | ||||| || ||| || || || || |||||||| ||||| Sbjct 89306 GACACTATCGA-TAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 89248 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||| ||||| || || || || ||||| | | || | || ||||| Sbjct 89247 GCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTTTCAGACTACAA 89188 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || || ||||| || || ||||| || Sbjct 89187 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTAGACTCAGAGGTGG 89140 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| | ||||| | ||||||||||| || Sbjct 88910 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 88851 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||||| || ||| || || ||||| || ||||| ||||| Sbjct 88850 GACACCATCGA-TAACGTCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 88792 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || ||||| || || || || |||| | || | || ||||| Sbjct 88791 GCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAA 88732 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || || || || || || || ||||| || Sbjct 88731 CATCCAGAAGGAATCTACACTCCACTTGGTCCTTAGACTTAGAGGCGG 88684 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || ||||| | ||||| |||| || || || || Sbjct 89138 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACGCTCGAGGTCGAATCTTCG 89079 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||||| || ||| || || ||||| || ||||| |||| Sbjct 89078 GACACCATTGA--CAATGTCAAGCAGAAGATCCAAGATAAGGAAGGTATCCCACCAGACC 89021 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || |||| |||||||| || || || || |||| || || | || |||| Sbjct 89020 AGCAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGGACCCTTTCTGACTACA 88961 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| ||||||||||| || || || || || || | ||||| || Sbjct 88960 ACATTCAGAAAGAATCCACTCTCCACTTGGTTCTCAGATTGAGAGGTGG 88912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327920782225