Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 9e-21
seq3 114 3e-20
>seq4
Length=1514682
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||||||| || | || | ||| || || ||||| || ||||| |
Sbjct 89140 CCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAA 89199
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | |||||||| || || || || || ||||| || | ||| || |||
Sbjct 89200 AGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGA 89259
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| ||| || ||||| || |||| ||| || || |||
Sbjct 89260 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCACT 89319
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 89320 TCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
|||||||| || | || | || ||| || ||||| || ||||| | || || |
Sbjct 88693 AGTCTAAGGACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTG 88752
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
|| || || || || || || |||||||| ||||| || || |||||| |||||
Sbjct 88753 CCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCC 88812
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435
||||||||||| ||| || ||||| || || | ||| || || ||||| || |||
Sbjct 88813 TTATCCTGGATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTG 88872
Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || |||| ||||||||||| ||||||||
Sbjct 88873 ATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 88910
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || || ||||| | || || || || || || || || || || || ||
Sbjct 88947 TTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAA 89006
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| ||||| || || |||||| ||||| ||||| ||||| ||| || || ||
Sbjct 89007 GATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTCTGCTTGACATT 89066
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || ||||| || ||||||||||| ||||| || || |||||||||||
Sbjct 89067 GTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGAC 89126
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 89127 GAAGATCTGCAT 89138
Score = 113 bits (124), Expect = 1e-19
Identities = 150/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || || |||| || || | || || || || || || || || |||
Sbjct 89404 TCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAG 89463
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401
|| ||||| || || |||||| ||||| ||||||||||| ||| || || |||||
Sbjct 89464 ATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTTTGC-TTGACGTT 89522
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || || || ||||| ||||| ||||| || || || ||||||||
Sbjct 89523 GTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGAC 89582
Query 288462 GAATATCTGCATTATGTTATTCTAAT 288487
||| |||||||| || | || |||||
Sbjct 89583 GAAGATCTGCATGATTTAATACTAAT 89608
Score = 107 bits (118), Expect = 5e-18
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | |||||||| || | || | ||| || || || || || ||||| |
Sbjct 1333656 TCCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 1333597
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || | ||||| || | || || || |||||||| || | ||| || |||||
Sbjct 1333596 AAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGG---TCTGG 1333540
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||||| || || |||||||| ||| || ||||| || || | ||| || ||
Sbjct 1333539 AGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTC 1333480
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 1333479 CACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429
>seq3
Length=1705961
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || || || ||||| || || || || || ||||||
Sbjct 1462820 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAG 1462761
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||||||| || || |||||||| ||| || |||||
Sbjct 1462760 ATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 1462701
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || ||||| ||||||||||| ||||| || || || |||
Sbjct 1462700 TCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACG 1462641
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1462640 AAAATCTGCAT 1462630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654173285170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |