Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq3 105 7e-18 >seq4 Length=1514682 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| ||||| |||| ||||| | |||| || Sbjct 1333637 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCG 1333578 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||| ||||| || |||| ||||||||| | || | | |||||||||| | Sbjct 1333577 AGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGG 1333518 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || || |||| ||| | | | |||||| || ||||| |||| |||||||| || Sbjct 1333517 ATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 1333459 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || || || ||||| Sbjct 1333458 ACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | | | |||||| || | ||| |||||| || || ||||| || | Sbjct 89139 ACCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 89198 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | |||||||||||| || || |||| ||||||||| | ||| Sbjct 89199 AAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGG 89258 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || |||| | | | |||||| || ||||| Sbjct 89259 AATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCAC 89318 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 89319 TTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366 >seq3 Length=1705961 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | | || ||||| || | || |||||| || || ||||| || | Sbjct 1462857 ACCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 1462798 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || | ||||||||||||||| || |||| ||||||||| | ||| Sbjct 1462797 AAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGG 1462738 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| || || |||| ||| | | | |||||| || || | Sbjct 1462737 GATTCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCAA 1462679 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||| ||||| || || || || || || || || || || ||||| || Sbjct 1462678 CCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTT 1462627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212698147600