Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 122 9e-23 seq3 98.7 1e-15 >seq4 Length=1514682 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | ||| | ||||||||| || ||||||| Sbjct 1333622 GACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCG 1333563 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || || || ||||| ||| || || || | Sbjct 1333562 AAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACG 1333503 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || ||||| ||||| || || Sbjct 1333502 TTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTG 1333443 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 1333442 ACGAAAATCTGCATG 1333428 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | ||| || || | | ||||||||||| |||||||| ||| Sbjct 89368 CCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAA 89427 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| | || ||||||| | |||| ||||| || ||||| || || Sbjct 89428 AGGGTTCTGCCA-TCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 89486 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| ||||| || | | || | |||||| | ||||| || Sbjct 89487 GATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAAC 89546 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || ||||| || || || || || || ||||||||| Sbjct 89547 CTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCATG 89595 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | ||| || || | | || || || |||||||||||||| Sbjct 88912 CCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAA 88971 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || ||||||| | |||| ||||| || ||||| || || Sbjct 88972 AGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGG 89031 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || || || | |||| || | |||||| | || || || Sbjct 89032 ATACCTTCCTTATCTTGGATCTTCTGCTTGACATTG-TCAATGGTGTCCGAAGATTCGAC 89090 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | || |||||||| ||||| || || || |||||||| Sbjct 89091 CTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| | || | || | ||||| | || ||||||| Sbjct 88717 GATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCA-TCCTCCAACTGCTTACCGGC 88775 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| ||||| || ||||| || || |||||||| || || ||| || || || | Sbjct 88776 GAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTCTGCTTGAC 88835 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| |||||||| || | || | || |||||||||| || || Sbjct 88836 GTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCTTACCAGTCAAGGTCTT 88895 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 88896 GACGAAGATCTGCAT 88910 >seq3 Length=1705961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | || ||| || || | | |||||||| || ||||||||||| Sbjct 1462856 CCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1462797 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| | || ||||| | |||| || | ||| ||||| || || Sbjct 1462796 AGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGG 1462737 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || || | | || | |||||||| ||||| ||| Sbjct 1462736 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1462677 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||| || || || || ||||| || ||||||||||| Sbjct 1462676 TCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCAT 1462630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262306950800