Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq3 96.9 3e-15 >seq4 Length=1514682 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||||||||| || |||||| | |||| | ||| ||||| || Sbjct 89392 TGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCCAACTGC 89451 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || || ||||| ||||| || || ||| Sbjct 89452 TTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTT 89511 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | |||||| || ||||| || ||||| || | || || || || Sbjct 89512 TGCTTGA-CGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATGGTCTTACCTGT 89570 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 89571 GAGGGTCTTGACGAAGATCTGCAT 89594 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || || | |||| | ||| ||||| || Sbjct 88708 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCTCCAACTGC 88767 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||||||||| || || || ||||| ||||| || || || Sbjct 88768 TTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTC 88827 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | ||||||||| ||||| ||||| ||||| | || || || || Sbjct 88828 TGCTTGA-CGTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCTTACCAGT 88886 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| Sbjct 88887 CAAGGTCTTGACGAAGATCTGCAT 88910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || || || | || | ||||||||||| || || || ||||| || Sbjct 88983 ATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 89042 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| || || || |||| || | |||||| ||||| ||||| ||||| || | Sbjct 89043 ATCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGAT 89102 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || || || || ||||| Sbjct 89103 AGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || ||||| || || || || || || Sbjct 1333574 TGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATC 1333515 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || |||| || | || | ||||||||||||||| || ||||| || | || || || Sbjct 1333514 TTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACC 1333456 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || ||||| ||||| Sbjct 1333455 GGTCAGGGTCTTGACGAAAATCTGCAT 1333429 >seq3 Length=1705961 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || || ||| | || | || |||||||| || || || || || || Sbjct 1462784 TCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTG 1462725 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || || |||| || | || | ||||||||||||||| || ||||| || | Sbjct 1462724 TCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1462666 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || ||||| || ||||| || ||||| |||||| Sbjct 1462665 CGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATC 1462629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003115249400