Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 5e-19
seq3 96.9 3e-15
>seq4
Length=1514682
Score = 109 bits (120), Expect = 5e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| ||||| || ||||||||||| || |||||| | |||| | ||| ||||| ||
Sbjct 89392 TGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCCAACTGC 89451
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | || | ||||||||||| || || || ||||| ||||| || || |||
Sbjct 89452 TTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTT 89511
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| |||| || | || | |||||| || ||||| || ||||| || | || || || ||
Sbjct 89512 TGCTTGA-CGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATGGTCTTACCTGT 89570
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || |||||
Sbjct 89571 GAGGGTCTTGACGAAGATCTGCAT 89594
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || |||||||| ||||| || || || | |||| | ||| ||||| ||
Sbjct 88708 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCTCCAACTGC 88767
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | || | ||||||||||| || || || ||||| ||||| || || ||
Sbjct 88768 TTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTC 88827
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| |||| || | || | ||||||||| ||||| ||||| ||||| | || || || ||
Sbjct 88828 TGCTTGA-CGTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCTTACCAGT 88886
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| || || || || || |||||
Sbjct 88887 CAAGGTCTTGACGAAGATCTGCAT 88910
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||| || || || || | || | ||||||||||| || || || ||||| ||
Sbjct 88983 ATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 89042
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||| || || || |||| || | |||||| ||||| ||||| ||||| || |
Sbjct 89043 ATCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGAT 89102
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || ||||| || || || || |||||
Sbjct 89103 AGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|| || || ||| | || | || |||||||| || ||||| || || || || || ||
Sbjct 1333574 TGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATC 1333515
Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313
|| || |||| || | || | ||||||||||||||| || ||||| || | || || ||
Sbjct 1333514 TTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACC 1333456
Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || || || ||||| |||||
Sbjct 1333455 GGTCAGGGTCTTGACGAAAATCTGCAT 1333429
>seq3
Length=1705961
Score = 96.9 bits (106), Expect = 3e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| ||||| || || || ||| | || | || |||||||| || || || || || ||
Sbjct 1462784 TCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTG 1462725
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| || || || || |||| || | || | ||||||||||||||| || ||||| || |
Sbjct 1462724 TCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1462666
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || ||||| || ||||| || ||||| ||||||
Sbjct 1462665 CGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATC 1462629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003115249400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |