Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 seq3 136 9e-27 seq1 123 6e-23 >seq4 Length=1514682 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | |||||| || |||||||| || | ||||||||||| | ||| || Sbjct 1333646 AGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTG 1333587 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| ||||||||||| || | ||||||||| ||| |||||| || Sbjct 1333586 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCC 1333527 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||| ||| || | |||||| | | || || || | ||| Sbjct 1333526 TTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTG 1333467 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || ||||| || Sbjct 1333466 ATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTG 1333432 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||| || ||||||||||||| |||||| || | | || || || Sbjct 89379 TCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 89438 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| ||||| ||||| ||||| |||||||| || || ||||| Sbjct 89439 ATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 89498 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||||||||| ||| || | |||||||| | || || || | ||||| Sbjct 89499 ATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGAT 89558 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || || || || || Sbjct 89559 GGTCTTACCTGTGAGGGTCTTGACGAAGATCTG 89591 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | |||||| || || ||||| |||| ||||||||| | | || Sbjct 88689 TCTAAGTCTAAGGACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGT 88748 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| |||| |||||| ||||||||||| ||||| |||||||| || || || Sbjct 88749 TCTGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACC 88808 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||||| ||| |||| |||||| | | || || || | Sbjct 88809 TTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACTTCAAG 88868 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | || || || || || || Sbjct 88869 AGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTG 88907 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||||||||| || || || || | ||||||||||| | |||| || Sbjct 88923 TCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCC 88982 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| ||||| ||||| ||||| |||||||| || || ||||| Sbjct 88983 ATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 89042 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||||| || || | |||||| | | ||| || || | |||||| Sbjct 89043 ATCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGAT 89102 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || ||||| || || || || || Sbjct 89103 AGTCTTACCAGTAAGAGTCTTGACGAAGATCTG 89135 >seq3 Length=1705961 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || | |||||||||||||||||| |||| ||||||||| | | || | Sbjct 1462847 AGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 1462788 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || |||| |||||| || |||||||| || | ||||||||| || ||||| || Sbjct 1462787 CCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCC 1462728 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||| ||| || | |||||| | | || || || | ||| Sbjct 1462727 TTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTG 1462668 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || ||||| || ||||| || Sbjct 1462667 ATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTG 1462633 >seq1 Length=2842153 Score = 123 bits (136), Expect = 6e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 |||||||||||||| ||||| || ||||| ||| | || ||| |||| ||||||| | Sbjct 871051 GCGTCCTTGTAGACCATGAATGGAGTACCAGTCTCGGTCTGGGCCTCCAAGATGTGGTAC 870992 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||||| || | |||| ||| | | ||| || ||||||||||| ||| Sbjct 870991 CACAGCTTCTGGGCCTTGATGGTACGTCTTCCACGTCCCTCGCGCTCGTATCTCTCGTAG 870932 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || |||||| || | ||||| | ||| |||||| || || ||| ||| | ||| Sbjct 870931 AGACGTTCGAACTCGTCTCCGTAGACATCGGAAAGACCTGGGGCCTCCGATGGAGAGAAG 870872 Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCA 168000 ||| |||| | | || |||||| | ||||||||||||||| | | |||| Sbjct 870871 AGAGTCCACGTGGAGTTGGCCTCGACACGCTTCATGAAGAGGTCAGGAATCCA 870819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921373426005