Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 208 8e-49 seq3 125 7e-24 >seq4 Length=1514682 Score = 208 bits (230), Expect = 8e-49 Identities = 577/870 (66%), Gaps = 21/870 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || ||||| || || | | ||| ||| | ||| || || || ||||| Sbjct 728441 TTCTCGAAGAAGTTAGTCTTACCAGCGAGGGAGATGTTCTCCATGAAGTCGAATGGGTTT 728500 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCA--GGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 | |||||| ||| ||| | || || | |||||| ||||| || ||||| Sbjct 728501 GTAACGTTGTACACCTTCTTGCA-ACCAACGGAAG-CGAGCAATCTGTCAGCACAGAACT 728558 Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCG 132801 ||| ||| || ||||| ||||| || | || |||| | | || || | || || Sbjct 728559 CGACGTACTGGCACATGAGGTCGCAGTTCATACCGAGCAAA-GAACATGGTAAGGCATCC 728617 Query 132802 GTG-AGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 | |||| | || |||||| |||| || ||||||| |||| | ||| || | Sbjct 728618 TTCCAGAAGGACTT-CTCGATATCGACAGCCTCGGTGATGATTCTGGTGACGATGGCTGG 728676 Query 132861 G-CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | || | |||| | | ||| ||| | ||||| || |||||| |||||||||| Sbjct 728677 GTCTGGAGTGTTGT-CGAGGTGCGAGAAGAGTAAGCAGGCGAAGTCGGTGTGCAAGCCCT 728735 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || ||| | ||||| |||||| ||| || | || |||||||| || | || |||| Sbjct 728736 CATCTCTGCAGATGAGCTCGTTGGAGAAGGTGAGACCTGGCATGAGACCTCTCTTCTTGA 728795 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || || | ||||| || || ||||||| || |||| ||| ||| | || | Sbjct 728796 GCCAGAAGATCGAAGCGAACGATCCTGAGAAGAAGATACCTTCGATGGCAGCGTAGGCGA 728855 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 ||| ||||| || | ||| || ||| | | ||||| | | ||||| ||||| Sbjct 728856 TCAGACGCTCAGCGTAAAGGGCGTCCTTGTTCTCCATCCATCTGACGGCCCAGAGGGCCT 728915 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTT----TCTCTTCC 133155 | || |||| || || | |||||||| | ||||| | |||| || ||| Sbjct 728916 TCTCCTTGATAGGTGGGATGTTCTCGATGGCCTCAAACAA--GTAGTTGGCCTCGCTTTT 728973 Query 133156 GAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 | | | |||||||||||| || || || | || ||||| | |||||||| Sbjct 728974 GTCGGTG--ATGTAGGTGTCGATCAGCACGGAGTAAGTCTCGGAGTGGATGTTCTCCACC 729031 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGC 133275 ||| || |||||||| ||| || ||||| || ||| || || || ||| | Sbjct 729032 ATGATCTGGAAGCCGTAGAAGGCACGGGCCTCTGGCATCTGAACCTCAGTAGTGAAGTTC 729091 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 | | || || |||| |||||| |||||| |||||||| || || ||||| || | Sbjct 729092 TGGCACAAGTTCTCGTCGACGATACCGTCGGAAGCGGCGAAGAATGCGAGCACACGCGAG 729151 Query 133336 ATGAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 ||||| | | ||||||| ||||||| | | ||||||| | ||||| |||| | Sbjct 729152 ATGAAGTATCTCTCGTTGGCGTTCAACTTGGTGTTCCAGTCGATCAGATCCTTAGACAAG 729211 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCC 133452 || | ||||||| |||||| || || |||||||| || |||||||| ||| ||||| Sbjct 729212 TCGATCTCCTCGGTGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGTCG 729271 Query 133453 GAATATTGTATGGGAAAAATCACAAACCGG 133482 || | || || || || ||||||||| Sbjct 729272 CTGTACTTGATAGGGAACATGACAAACCGG 729301 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| |||| || ||| || | Sbjct 89594 ATGCAGATCTTCGTCAAGACCCTCACAGGTAAGACCATCACACTCGAGGTTGAGTCCTCA 89535 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || |||| |||| || || || || || || | ||||| Sbjct 89534 GACACCATTGACAACG-TCAAGCAAAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 89476 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || ||| |||| || | | ||||| ||| ||||| Sbjct 89475 GCAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCCGATTACAA 89416 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | ||||| || ||||| || | |||||||| || Sbjct 89415 CATCCAAAAGGAGTCTACGCTCCACTTGGTTCTCAGATTGAGAGGTGG 89368 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| || ||| | || Sbjct 1333429 ATGCAGATTTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1333488 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||||||||| | ||||| Sbjct 1333489 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGAATTCCTCCAGACCA 1333547 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || ||||| || |||| | || || |||||||| Sbjct 1333548 GCAGAGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAA 1333607 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || || ||||| || | ||||||| || Sbjct 1333608 CATTCAGAAGGAGTCCACCCTCCACTTGGTCCTTAGACTGAGAGGTGG 1333655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || ||||| | || || ||| || || Sbjct 88910 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 88851 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 88850 GACACCATCGATAACG-TCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 88792 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| || || ||| |||| || | | ||||| |||||||| Sbjct 88791 GCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAA 88732 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||| |||||| | || || || ||||| || | | ||||||||| || Sbjct 88731 CATCCAGAAGGAATCTACACTCCACTTGGTCCTTAGACTTAGAGGCGGCTGC 88680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || ||||| | || || ||| || || Sbjct 89366 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 89307 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || ||||| ||||| | ||||| Sbjct 89306 GACACTATCGATAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 89248 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || || || ||| |||| |||| | ||||| |||||||| Sbjct 89247 GCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTTTCAGACTACAA 89188 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| | || || || |||||||| Sbjct 89187 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 89155 >seq3 Length=1705961 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || || || || || |||||| |||| || ||| | Sbjct 1462627 AAGATGCAGATTTTCGTTAAAACCCTTACCGGAAAGACGATCACCCTCGAGGTTGAGTCT 1462686 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| |||||||| || | || Sbjct 1462687 TCCGACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCACCTGA 1462745 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | || || | ||| || || ||| |||| |||| || ||||| ||||| Sbjct 1462746 CCAGCAGAGACTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTTCGGACTA 1462805 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| || || ||||| ||| | ||||||| || Sbjct 1462806 CAACATCCAGAAGGAGTCGACTCTCCACTTGGTTCTGAGACTGAGAGGTGG 1462856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172706217600